Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00520 ATGAAGTTGAGTTGCAATGGGTGTCGAATTCTCCGCAAAGGTTGTGATGAGGACTGTGCCATAAGGCCATGCCTTGAGTGGATCAACACTCCTGAGGCCCAAGCCAACGCCACCCTCTTCCTTGCCAAATTCTATGGCCGTGCTGGCTTGCTCAACCTCATCAATGCTGCCCCACAACATAATCGCCCAGCTGTGTTCAAGTCACTGTTGTACGAGGCATCTGGGAGAATTGCGAACCCGACATATGGGTCAGTGGGCTTGTTTTGGACCGGTGAGTGGGCCCAATGCCAAGCTGCCGTTGATGCTGTGCTGGCTGGGTCCCAGATCAACGACGTAGGAGCTTCCAATTCGCAGATGACTGTGACACATGATGACGAGCATGTTGCCCAAATCCTTGGCATACGCCACGTGTCCAAAGATGCTGACATGGACCAAGTGAAAGGAAAAGCCAAGAAGGTCAATAGGTTCGGGAAAGTGATCAAGCCGAAGCCGCGAGTGGGTTTAGTCGACTCGGCTGCGCTGTTGAAGCCAGCTTCGAGCCGTGAGATGGGAGAGTCCGAGGATGATGATAGTGAGGAAACTGTGGAGGCTATGTTGGTGAGCCAAGACAAGCTGAGCCGAAATGGTGGAGCTGAGATGGATTTGGACCTCACTCTCGGCTAG 663 0.5324 MKLSCNGCRILRKGCDEDCAIRPCLEWINTPEAQANATLFLAKFYGRAGLLNLINAAPQHNRPAVFKSLLYEASGRIANPTYGSVGLFWTGEWAQCQAAVDAVLAGSQINDVGASNSQMTVTHDDEHVAQILGIRHVSKDADMDQVKGKAKKVNRFGKVIKPKPRVGLVDSAALLKPASSREMGESEDDDSEETVEAMLVSQDKLSRNGGAEMDLDLTLG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00520 220 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Pumo8g00520 220 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Pumo8g00520 220 MobiDBLite consensus disorder prediction 177 220 - -
Pumo8g00520 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00520 Pumo-Chr8 15622147 15623346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00520 1 219 AS2 family AT3G02550 45.887 2.95e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo8g00520 LOB 8.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00520 - - gmx:100789066 350.517