Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00513 ATGGTGAAGCCTCGTAATCAATCGGCTCCTAAGATGAAAAAAATCAAGCAAAAGCGAAATCCGTTTCATGACTCGAAAATGCCGAGGAAACTGCGCATCATTTACGATGATCCTGATGCTACTGACTCTTCATCTGATGAGGCTGAGCATTCTGGGAATGGAAGGAAGATGAAGAGAGCTGTGCTTGAGATTGCTCTTCCACCTGTTTCATTTAACTCTGTTGTTGCAGCTAGCACTGAGAGCACAAACAATAATGAACTGAACAAGATGAGGAGGGTTTTGGCCAAAACCCCCTCAGTGAAGAGGCAATCTTGTGGGAAGTACAAAGGCGTTCGGATGAGGAAATGGGGCAAGTGGGCTGCTGAGATTCGCGACCCTTTCAAGGGGGCGCGAATCTGGCTGGGCACTTTCAACACCGCAGAAGAGGCTTCTCAGGCCTACGAGACCAGGAGGCTCGAATTTGAGGCCATGGCCAAGGCCAAGGCCCTATCTGATGAGAAGAGCAACAACAACAATGGCAGCAACAGCAACAGCAACAGAAGCAACAACAATGTTGTTGCTTCTGTTGAAACTGTGGCTGCCCCAAAGAAGAACAGTTCCAACTATTGTGTTTCTTCTGCTGCAGGTTCTGTATCAGACTCCAAGTCTGCTTCTATGGATGACACAGACAGTGCCTTGTCACACACATCACCATCTTCTGTGCTTGAGTTGGATACCTCTGCTTCCAATTTGATTGGGAGTGGTAAGGTTTCAAGCAATGAAGTTGTTGAGACTAAAGATTTGAAGGCTGAACTTGTTGAGACTAAAAGTTTGGAGGCTGAATTTGCTGATCTGGAAATGCCGGATTTGAGTATGCTGAATGTGCCATCCCTTGCTGATACTGCTACTCCGTCTCAGTTTGACTTGGATTGGTTGGCGTTTGATGGTTTCGAGCATGGATTGGACGACGAGCACGGCTTCGATGATGATCTTACTGCCCTGGAAGACATTCACATTTGCGGTTTTGATGACAACGAGCCTAGTGACCTTCCCGATTTCGATTTCGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCCCAATATACCTTGCGTATAG 1110 0.4694 MVKPRNQSAPKMKKIKQKRNPFHDSKMPRKLRIIYDDPDATDSSSDEAEHSGNGRKMKRAVLEIALPPVSFNSVVAASTESTNNNELNKMRRVLAKTPSVKRQSCGKYKGVRMRKWGKWAAEIRDPFKGARIWLGTFNTAEEASQAYETRRLEFEAMAKAKALSDEKSNNNNGSNSNSNRSNNNVVASVETVAAPKKNSSNYCVSSAAGSVSDSKSASMDDTDSALSHTSPSSVLELDTSASNLIGSGKVSSNEVVETKDLKAELVETKSLEAEFADLEMPDLSMLNVPSLADTATPSQFDLDWLAFDGFEHGLDDEHGFDDDLTALEDIHICGFDDNEPSDLPDFDFDDFGADEFAGWIEEPPNIPCV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00513 369 SMART rav1_2 107 177 IPR001471 GO:0003700|GO:0006355
Pumo8g00513 369 MobiDBLite consensus disorder prediction 200 232 - -
Pumo8g00513 369 MobiDBLite consensus disorder prediction 162 183 - -
Pumo8g00513 369 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Pumo8g00513 369 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Pumo8g00513 369 SUPERFAMILY DNA-binding domain 107 154 IPR016177 GO:0003677
Pumo8g00513 369 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Pumo8g00513 369 PIRSF PTI6 225 360 IPR017392 GO:0003700
Pumo8g00513 369 PIRSF PTI6 6 243 IPR017392 GO:0003700
Pumo8g00513 369 ProSiteProfiles AP2/ERF domain profile. 107 166 IPR001471 GO:0003700|GO:0006355
Pumo8g00513 369 CDD AP2 107 147 IPR001471 GO:0003700|GO:0006355
Pumo8g00513 369 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 235 - -
Pumo8g00513 369 MobiDBLite consensus disorder prediction 164 183 - -
Pumo8g00513 369 Gene3D AP2/ERF domain 106 162 IPR036955 GO:0003700|GO:0006355
Pumo8g00513 369 MobiDBLite consensus disorder prediction 21 55 - -
Pumo8g00513 369 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00513 Pumo-Chr8 15175540 15177948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00513 14 368 AP2-EREBP Transcription Factor Family AT1G68550 34.332 5.73e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g00513 AP2 9.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00513 - - gmx:102667919 528.094