Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00510 ATGTCCATGTCTGGTATCAACACCAACCAGCCGCCAACAGATTTTGAGCAAGAGGTGGTGTACAAGGAGTGCCTGAAAAACCATGCAGCAGCACTTGGCCGAGTTTCCTATGATGGTTGTCCTGAGTATCTCAAAGGACGCGCTGACCTCAATGGTCAAGACACTCTCCTATGTGCTTGTTGCGGCTGTCATCGTAGCTTTCACCGCGAGCACATTGTTTTCGACGATGAGACCCAATCTCAACCAGTGAGGAGGACGACGTTCTCGCCGGAGCAGAGGAACCAATTGATGAGGTTTGTTTACAGTGTAGGGAATCAGTCGTAG 324 0.5031 MSMSGINTNQPPTDFEQEVVYKECLKNHAAALGRVSYDGCPEYLKGRADLNGQDTLLCACCGCHRSFHREHIVFDDETQSQPVRRTTFSPEQRNQLMRFVYSVGNQS 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00510 107 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Pumo8g00510 107 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 71 IPR006456 -
Pumo8g00510 107 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 104 - -
Pumo8g00510 107 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00510 Pumo-Chr8 15041216 15041539 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00510 17 72 Zinc finger-homeobox gene family AT3G28917 51.786 5.10e-15 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo8g00510 ZF-HD_dimer 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00510 - - gmx:102668663 108.997