Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00508 ATGTCCATGTCTGGTATCAACACCAACCAGCCACCAATAGATTTTGAGCAAAAGGTGGTGTATAAGGAGTGCTTGCACAACCATGCAGCAACACTTGGCCAAGTTTCCTACGATGGTTGTCATGAGTATCTCAAAGGACGCGTTGAAGCTCTCCTATGTGCTTGTTGCGGCTGTTGCCGTAGCTTTCACCGCAAGCACGTTGTTTTCAATGTTGTCCCCCGAACTGATCAACTAGAGAATGGTCTCAACCCAAAAGGCTAG 261 0.4751 MSMSGINTNQPPIDFEQKVVYKECLHNHAATLGQVSYDGCHEYLKGRVEALLCACCGCCRSFHRKHVVFNVVPRTDQLENGLNPKG 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00508 86 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 68 - -
Pumo8g00508 86 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 66 IPR006456 -
Pumo8g00508 86 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 66 IPR006456 -
Pumo8g00508 86 Pfam ZF-HD protein dimerisation region 19 67 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00508 Pumo-Chr8 14965951 14966211 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00508 13 67 ZF-HD Transcription Factor Family AT2G02540 49.180 2.43e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo8g00508 ZF-HD_dimer 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00508 - - gmx:102668663 98.5969