Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00496 ATGAAGGTTTTCGTGAAGACTCTCAAGGGAACGCACTTCGAAATTGAAGTGAACCCCTCGGACACGCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCGCAGCAAATGCTTATTTATCAAGGAAAAGTTCTAAAGGATGGCACTACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTATCAAAGACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAAATGCACCTTCAGCTAAGACTAGTGCAACTCCTACATCAACCTTTGTGTCTGCTGCACCTCAAGCTCCTGCTTCAACTGGAGCAACGCCTACACCTGTCACTGCCCCAGCAGCTGCTCCTGCTTCTGCACCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCACCAGCTCCTGCTCCTGCTTCTGCACCAGCTCCTGCTCCTGCACCAGCTCCTGCTCCTATATCTTCAGGCTATGCTGTGCCAGGGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGTAACTTGGAGGAAACAATTCAGCAAATCCTTGACATGGGTGGAGGAAGCTGGGACAGGGATACCGTTGTTCGCGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGTGCCTGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTCCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCCAATGTTGGGTCTGGTGCTGCTGGTGCTGGCTCGTTAGACTTTCTTCGCAACAGTCAACAGTTCCAAGCCTTACGCGCTATGGTACAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGCGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGCGAGGGAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAACGTCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAATAA 1266 0.4834 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIYQGKVLKDGTTLEENKVAENSFIVIMLSKTKSSSGEGSTTSNAPSAKTSATPTSTFVSAAPQAPASTGATPTPVTAPAAAPASAPAPAPAPAPAPAPAPAPAPASAPAPAPAPAPAPISSGYAVPGSDIYGQAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTRVPASAQPANPPAAAPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00496 421 Gene3D - 183 233 - -
Pumo8g00496 421 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 410 - -
Pumo8g00496 421 MobiDBLite consensus disorder prediction 239 281 - -
Pumo8g00496 421 FunFam UV excision repair protein RAD23 homolog 183 233 - -
Pumo8g00496 421 MobiDBLite consensus disorder prediction 125 161 - -
Pumo8g00496 421 Gene3D - 369 416 - -
Pumo8g00496 421 Gene3D - 287 352 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pumo8g00496 421 Gene3D - 1 80 - -
Pumo8g00496 421 MobiDBLite consensus disorder prediction 77 161 - -
Pumo8g00496 421 CDD Ubl_Rad23 1 74 - -
Pumo8g00496 421 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pumo8g00496 421 NCBIfam UV excision repair protein Rad23 1 420 IPR004806 GO:0006289
Pumo8g00496 421 SMART CBM 294 337 IPR006636 -
Pumo8g00496 421 Pfam XPC-binding domain 296 351 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pumo8g00496 421 FunFam UV excision repair protein RAD23 1 80 - -
Pumo8g00496 421 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Pumo8g00496 421 SUPERFAMILY UBA-like 187 242 IPR009060 GO:0005515
Pumo8g00496 421 FunFam UV excision repair protein RAD23 B 287 352 - -
Pumo8g00496 421 MobiDBLite consensus disorder prediction 77 120 - -
Pumo8g00496 421 SMART ubq_7 1 75 IPR000626 GO:0005515
Pumo8g00496 421 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 188 231 IPR015940 -
Pumo8g00496 421 SUPERFAMILY UBA-like 358 420 IPR009060 GO:0005515
Pumo8g00496 421 SMART uba_6 377 414 IPR015940 -
Pumo8g00496 421 SMART uba_6 190 230 IPR015940 -
Pumo8g00496 421 PRINTS DNA repair protein Rad23 signature 403 418 IPR004806 GO:0006289
Pumo8g00496 421 PRINTS DNA repair protein Rad23 signature 322 344 IPR004806 GO:0006289
Pumo8g00496 421 PRINTS DNA repair protein Rad23 signature 371 387 IPR004806 GO:0006289
Pumo8g00496 421 PRINTS DNA repair protein Rad23 signature 388 402 IPR004806 GO:0006289
Pumo8g00496 421 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pumo8g00496 421 SUPERFAMILY XPC-binding domain 293 358 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pumo8g00496 421 Pfam UBA/TS-N domain 190 228 IPR015940 -
Pumo8g00496 421 Pfam UBA/TS-N domain 377 412 IPR015940 -
Pumo8g00496 421 FunFam UV excision repair protein RAD23 homolog 368 416 - -
Pumo8g00496 421 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 374 415 IPR015940 -
Pumo8g00496 421 CDD UBA1_Rad23_plant 184 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00496 Pumo-Chr8 14717683 14729002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00496 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 2.68e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00496 K10839 - gmx:100809066 612.838