Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00488 ATGATCCATGCAAAGAGGGATAAAGGGAAGCTGCAAATTAAGAAACACATGATGGGGATCACCTATGGGAAGCTAGTCAAGGCCTCTTCTTTTAGAATGTTTGAGTTTGGAATATATCTTCTTGTTGCACGCCCTAGCTCAAAGAATCATTGTGAACTCAGAACACTGGTCATGGCAAGTATTTGGATATTCCTCGCTGCCATGTTAACCACATCAGCTCTCGCCGACCCTCACCATGTTCAAGAAGTTGCTCAAGGTCCGGATCATAAAGTCAATTTGCTAGAGTCACTAAATGGGGACTTCCCCTCATGGGTGACAAGCAAGGACAGGAGGCTTTTGGAGGCTACAGCAGGGGACATCAATGCCAATGTTGTGGTGGCTCAAGATGGGAGTGGCAACTTCAACTCTGTGGCTGAAGCTGTGGCATCGCACCCAACAACAGCAACACAAGAGAACGTTCAAATCAGTAGTGAGAAGAAGAATCTCATGCTCATGGGTGATGGCATGAATGCAACCATAGTAACTGGCAGCTTGAATTTCGTGGATGGAGCAGACATATCAGAGAGTGCCACTGTTGGTGTGAATGGGGATGGGTTTATAGCCCAAGACATTTGCTTCCAAAACACGGCAGGCCCACAGAAGGCGCAGGCAGTAGCTCTCCGCGTCTGCGCCGACCAGTCCATGATAAACCGTTGTGGCATTCAGGGTTACCAAGACACTCTTTATGTCCAATGCAAAAAACAGTTTTATCGGGACTCCTTCCTCACCGGCACCATTGATTTTATCTTTGGAGATGCTGCTGTTGTGTTTCAGAAGTGCCAGCTGGTGGCCCGAATGCCCTTGACTGGCCAATACAACGTGATCACAGCCCAAGGACGAATTGATCCAACTCAAAACTCAGGAATTTCAATTCAACAATGTGATATTATACCTAGCTCTGATCTTAAGCCTGTGGTGGGATCCATTAAGACTTTTCTGGGCCGTCCATGGAAAAACTTCTCAAGAACAGTTGTGATGGAGTCTTTTCTAGACAGTCATATTGACCCAGCAGGATGGGTAGAATGGGATCCCAATCATTCGAGCTATTTGCAAACCTTATACTATGGAGAGTATCTGAATAGCGGACCAGGTGCTGATACCAGCAAAAGAGTTAACTGGACTGGTTATCATGTCATCACTGAAGAGGAGGCCAGCAATTTCACAAGTAAAACAGCTCATCAATGGTGA 1227 0.4629 MIHAKRDKGKLQIKKHMMGITYGKLVKASSFRMFEFGIYLLVARPSSKNHCELRTLVMASIWIFLAAMLTTSALADPHHVQEVAQGPDHKVNLLESLNGDFPSWVTSKDRRLLEATAGDINANVVVAQDGSGNFNSVAEAVASHPTTATQENVQISSEKKNLMLMGDGMNATIVTGSLNFVDGADISESATVGVNGDGFIAQDICFQNTAGPQKAQAVALRVCADQSMINRCGIQGYQDTLYVQCKKQFYRDSFLTGTIDFIFGDAAVVFQKCQLVARMPLTGQYNVITAQGRIDPTQNSGISIQQCDIIPSSDLKPVVGSIKTFLGRPWKNFSRTVVMESFLDSHIDPAGWVEWDPNHSSYLQTLYYGEYLNSGPGADTSKRVNWTGYHVITEEEASNFTSKTAHQW 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00488 408 FunFam Pectinesterase 4 120 408 - -
Pumo8g00488 408 SUPERFAMILY Pectin lyase-like 121 402 IPR011050 -
Pumo8g00488 408 Gene3D - 117 408 IPR012334 -
Pumo8g00488 408 PANTHER PECTINESTERASE 67 404 - -
Pumo8g00488 408 Pfam Pectinesterase 123 403 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00488 Pumo-Chr8 14473114 14475924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00488 97 401 Carbohydrate Esterase AT1G11580 60.000 1.25e-134 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00488 K01051 - gmx:100815836 442.965