Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00471 ATGGAAGAAGTGAATGAGAACCTCCGCTCCCCGATTTGCTGTATCATGGGGCACGTAGATACCGGCAAAACCAAGCTCTTGGACTGCATTCGCGGCACTAACATTCAGGAAGGTGAAGCTGGCGGTATCACACAACACATTGGTGCAACATACTTTACTACTGAGAACGTACGCGAAAGAACCAAGGAACTGGAGATTGCTGCAATGTACTTTCTTGACGAGAACATGCGCGAAAGGATCGAGGAACAGATGAATGCAAAGATGAAATCTCCCGGTCTACTGGTCATTGATACCCCAGGGCACGAGTCGTTTACTTACTTGAGGTCTTGGGCTTCAGGTCTATGTGATGTTGCAATTTTGGTTGTTGACATTGAGTTTGGGGTAGAGCCACAAACAGTAGAATCACTAAATCTATTAAAGATGAGGAATACGAAATTCATTGTTGCCTTGAATAAGGTTGACAAGCTTCGTGGGTGGAGAGCATGTCGCAATACTCCAATTGTTGAAGCAGTGGCGCAGCAGACTGAGGATGTTCAACTTGAGTTTTATGGGAGGCTCGATGTGATTATTGATCAATTCTCAGGAGAGGGGCTGAATACTGAGTTGGTGGATACTGAGTTGTATTATGAAAACAAAGAAATGGGAGAAACGGTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATTCCTGAATTGTTATTACTATTGGTTCAATGGACCCAAAAAACGATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTAGAAGTGAAGGTAGTTGAAGGCCACGGAACTACTATTGATGTTGTTTTAGTCAATGGTGTTCTTCACGAAGGAGAACAAATACTCAGCCTAATGAATTTTTTATTACAGGGGCCAATTGTTACCACAATTCAAGCTCTATTGACACCTCATCCAATGAAGGAACTCTGTGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTGTAAAAATCACTGCCCAGGGGCTTGAACATGCCATGGCTGGCACTGATTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGCTAAAGAAGCAGCCATGGAATATATGCGGTCAGTCATGTTCAGGATTGACAGGGCCGGTGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTTCTTGGAGGCATTACTAGAGTTTTCGAAAACCGGTCTATATATGAGTATCCCTGTAAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCTAGTGTAATGCTTGAAAAGAAGAAAGAGTTTGCAGCAATATTGGCATTTGATGTCGAAGTTACTCCTGAGGCTAGGGAACTGGCAGATGAATTGGGTGTGAAGATATTTGTTGCTGATGTCATTGATCATCTGTTTGATCAATTTGAAGCTTATATTGACAACATGGAGAAAAAGACAGAAGCTGCTGATGAGGCAGTGTTCCCATGTATTTTGAAAATCTCACCAGATTGCATTATCAACGTGAAGGACCCAATTGTTTTGGGAGTTGATATCCTTGAAGGCATTGCAAAGATTGGGACTCCAATCTGCATTCCTTCCAGAGAGTTCATTGATAATGGTCGCATTGCCTCCATTGAGAATAACCATAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTAGTCATTAAGATTGTTGGCAGCAATCCTGAAGAGCAACAAAAAATGTATGGGAGGCATTTTGAGATTGTTGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATACTCAAAGCTAATTATCCGGATGATCTTTCTATGGAGGAATGGAAATTGGTTGTGAAATTGAAGAATCTATTCAAGATACAATGA 1878 0.4164 MEEVNENLRSPICCIMGHVDTGKTKLLDCIRGTNIQEGEAGGITQHIGATYFTTENVRERTKELEIAAMYFLDENMRERIEEQMNAKMKSPGLLVIDTPGHESFTYLRSWASGLCDVAILVVDIEFGVEPQTVESLNLLKMRNTKFIVALNKVDKLRGWRACRNTPIVEAVAQQTEDVQLEFYGRLDVIIDQFSGEGLNTELVDTELYYENKEMGETVSIVPTSAISGEGIPELLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQILSLMNFLLQGPIVTTIQALLTPHPMKELCVKGTYLHHKEIKAAMGVKITAQGLEHAMAGTDLYVVKPDDDLEDAKEAAMEYMRSVMFRIDRAGEGVCVQASTLGFLEALLEFSKTGLYMSIPVSGISIGPVHKKDVMKASVMLEKKKEFAAILAFDVEVTPEARELADELGVKIFVADVIDHLFDQFEAYIDNMEKKTEAADEAVFPCILKISPDCIINVKDPIVLGVDILEGIAKIGTPICIPSREFIDNGRIASIENNHKPVDYAKKGQKVVIKIVGSNPEEQQKMYGRHFEIVDELVSHISRRSIDILKANYPDDLSMEEWKLVVKLKNLFKIQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00471 625 PRINTS GTP-binding elongation factor signature 146 155 IPR000795 GO:0003924|GO:0005525
Pumo8g00471 625 PRINTS GTP-binding elongation factor signature 94 104 IPR000795 GO:0003924|GO:0005525
Pumo8g00471 625 PRINTS GTP-binding elongation factor signature 110 121 IPR000795 GO:0003924|GO:0005525
Pumo8g00471 625 PRINTS GTP-binding elongation factor signature 12 25 IPR000795 GO:0003924|GO:0005525
Pumo8g00471 625 CDD aeIF5B_II 255 368 - -
Pumo8g00471 625 FunFam Eukaryotic translation initiation factor 5B 2 253 - -
Pumo8g00471 625 CDD IF2_eIF5B 11 244 - -
Pumo8g00471 625 Pfam Translation-initiation factor 2 363 476 IPR023115 -
Pumo8g00471 625 SUPERFAMILY Translation proteins 492 624 IPR009000 -
Pumo8g00471 625 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 8 247 IPR000795 GO:0003924|GO:0005525
Pumo8g00471 625 FunFam Eukaryotic translation initiation factor 5B 488 625 - -
Pumo8g00471 625 FunFam eukaryotic translation initiation factor 5B 254 376 - -
Pumo8g00471 625 FunFam Eukaryotic translation initiation factor 5B 376 483 - -
Pumo8g00471 625 Pfam Elongation factor Tu GTP binding domain 12 243 IPR000795 GO:0003924|GO:0005525
Pumo8g00471 625 NCBIfam small GTP-binding protein domain 13 155 IPR005225 GO:0005525
Pumo8g00471 625 Gene3D - 3 253 IPR027417 -
Pumo8g00471 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 325 IPR027417 -
Pumo8g00471 625 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 359 486 IPR036925 -
Pumo8g00471 625 Gene3D - 376 483 IPR036925 -
Pumo8g00471 625 Gene3D Translation factors 254 375 - -
Pumo8g00471 625 Gene3D Translation factors 488 625 - -
Pumo8g00471 625 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 6 622 IPR015760 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00471 Pumo-Chr8 14165701 14172499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00471 3 625 Eukaryotic Initiation Factors Gene Family AT1G76810 73.163 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00471 K03243 - gmx:100814875 961.444