Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00462 ATGTGGAGATCAACATTGGAGGGTCTCATAATTGTGGCGTTTCATTCTTCTAGATCTCATCTCAACATGACTTCTGCACGCAATAAGCATCCCTTGCCCACCGGAGTTCATTTCTTTAAGATTATTCCAAGAACAAGTCTTGAACATGGATTACTTCTCCCAAAAGATTTCACCAGAAAATATGGAGATGGAATGTCAAACCCGGTGTTTCTCAAGGCTCCAGATGGCACTGAATGGAAAACATGTTGGACCAAGCATGATGGTGACATTTGGTTTCAAAAGGGTTGGAAGGAGTTTGCCACATACTATTCTCTAGATCATGGCCACTTGCTGTTCTTTGAATATGAGGGAACTTCTCATTTTGATGTGCACATATTTGACCACAGTGCCGTTGAAATAGACTATCCTTCCCATGGTACTCACGAAGAAAAGGACAACCTTGTGGAGAGTAGTGACGATTCTGTTGAAATTTTGGGTGAGCAATTTTCATGCCAAAAAACTGGCGTGAAATCCATGGTGTCATCTTCTCAACCTTCTAAGGAAATGAAAGCTGGCCTAACTACAAATATTGATAAAAGCCCCAATAGGGTAAACTTGAATCAGCATGTCCAAACAAGTAGTAGCTCTCAAAAGGCAAAATTTATGAAGCAAGAAGTAGATGAAGATGAGGGTAAAGGCATTTTTAACACTGAATGCCCAAATGGGGAGCAGTTAACTTCTACCACTGCTTTCAGATTTGAACATCCCTCTTTCAGGCTTATCATGAAGCCATCCTTTATAAATGGATATAACCTGGAAATACCTCAGCATTTTGCAGAAAAATATTTGAAGAAAACACATGCAATTGTCATCCTTGAGGTCTTGAACGGGAGAACTTGGCCTGTTATTTATTCTGCTCCTAGACTTACTGGGGGATGGCAGAAATTTGCATCAGAAAACAATTTGAATGTGGGGGATGTTTGTGTTTTTGAACCGATCCAGAAGATCCAGGGCATTGCTTTCAAGGTTTCCATCTTTCAAGGTGCAGAGGCAACAAGTTGCCCCATTTCACAAGGCAATCTCTCTACTGGTTGGGCCTCATTTGTAAGAGAAAATGAACTGCAACGGGGAGATGTATGTATCTTCGAGCTCGTCAACAGAGAAGATGCAACACTTGATGCTCATGTTTTCAGAGGACACCATAAGGTTCCCCGGAAGGAAATGGGGATGCAGAAGTTTTGCAAGCATAAGTTTGATAGGGATTTATAA 1248 0.4119 MWRSTLEGLIIVAFHSSRSHLNMTSARNKHPLPTGVHFFKIIPRTSLEHGLLLPKDFTRKYGDGMSNPVFLKAPDGTEWKTCWTKHDGDIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVHIFDHSAVEIDYPSHGTHEEKDNLVESSDDSVEILGEQFSCQKTGVKSMVSSSQPSKEMKAGLTTNIDKSPNRVNLNQHVQTSSSSQKAKFMKQEVDEDEGKGIFNTECPNGEQLTSTTAFRFEHPSFRLIMKPSFINGYNLEIPQHFAEKYLKKTHAIVILEVLNGRTWPVIYSAPRLTGGWQKFASENNLNVGDVCVFEPIQKIQGIAFKVSIFQGAEATSCPISQGNLSTGWASFVRENELQRGDVCIFELVNREDATLDAHVFRGHHKVPRKEMGMQKFCKHKFDRDL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00462 415 SUPERFAMILY DNA-binding pseudobarrel domain 353 391 IPR015300 -
Pumo8g00462 415 SMART B3_2 251 342 IPR003340 GO:0003677
Pumo8g00462 415 SMART B3_2 38 129 IPR003340 GO:0003677
Pumo8g00462 415 CDD B3_DNA 249 339 IPR003340 GO:0003677
Pumo8g00462 415 PANTHER B3 DOMAIN-CONTAINING 353 381 - -
Pumo8g00462 415 ProSiteProfiles B3 DNA-binding domain profile. 36 129 IPR003340 GO:0003677
Pumo8g00462 415 CDD B3_DNA 37 127 IPR003340 GO:0003677
Pumo8g00462 415 ProSiteProfiles B3 DNA-binding domain profile. 354 393 IPR003340 GO:0003677
Pumo8g00462 415 Gene3D - 345 394 IPR015300 -
Pumo8g00462 415 Gene3D - 231 344 IPR015300 -
Pumo8g00462 415 ProSiteProfiles B3 DNA-binding domain profile. 250 342 IPR003340 GO:0003677
Pumo8g00462 415 SUPERFAMILY DNA-binding pseudobarrel domain 36 129 IPR015300 -
Pumo8g00462 415 Gene3D - 34 130 IPR015300 -
Pumo8g00462 415 Pfam B3 DNA binding domain 38 128 IPR003340 GO:0003677
Pumo8g00462 415 Pfam B3 DNA binding domain 354 391 IPR003340 GO:0003677
Pumo8g00462 415 Pfam B3 DNA binding domain 255 340 IPR003340 GO:0003677
Pumo8g00462 415 SUPERFAMILY DNA-binding pseudobarrel domain 246 340 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00462 Pumo-Chr8 13962864 13967303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00462 41 340 B3 DNA Binding Superfamily AT3G18990 31.845 5.93e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo8g00462 B3 1.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00462 - - gmx:100818507 516.538