Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00460 ATGGGTGGAGTACACAGGCAGAGTAGGAAGGATAACAACTCTGGAAGAGGAAGTAGACATCTTTCAGAATTATGTAAAGTCGAATACCCATTATGGGTCAAGTACTGCTTATGGTTATTAGCCGAGCTCGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCATTGAACATACTCTTCCACATCCCAGTATGGGCAGGAGTTCTGGTGACTGGCTGCAGCACCCTCTTACTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAACTGCTGATATCAATCCTAGTTTTTCTAATGGCTGGATGTTTCTTTGGGGAAATGAGCTACGTAAAAATTCCTGCTTCTGGTGTATTAAAAGGAATGTTCGTGCCAAAACTCAGCGGTCGAGGAGCCACAGGCGATGCTATTGCCCTTTTGGGTGCACTTGTCATGCCGCACAATCTTTTCCTCCACTCTGCTCTGGTGCTGTCTAGAAAAGTACCCAGTTCCGTACGTGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGGTTCGCACTGATTGTGGCATTTCTAATCAATGTTGCAATGATTTCTGTGTCCGGAACTGTTTGCTCTGCCCACAATCTTTCTGCAGAAAATGCTGATAATTGCAGCAATCTTACCCTTAACTCTGCTTCTTTCCTTTTCAAGAATGTGTTTGGACGGTCGAGCTCAACCATTTATGGCATAGCACTGCTTGCCTCAGGACAAAGTTCTACTATCACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTCTTGGACATGAAGATGAAAAGATGGATTAGAAACTTAGTGACTAGGTGCATTGCCATTACACCTAGTCTTGTTGTTTCCATCATCGGTGGTTCTACAGGGGCTGGTCAGCTTATCATCATCTCATCGATGATACTTTCTTTCGAGCTTCCATTTGCTTTAATTCCACTCCTTAAGTTCAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCCATGATTATCATTGTCATCTCATGGATACTAGGCTGGGGAATGATTGGTATCAATGTGTACTACCTCTCTACTGGCTTTGTGGGTTGGTTAATTCATAACAGTCTACCAAAGGTGGCAAATGTGTTCATTGGAATCATAGTGTTTCCTCTAATGGCAGTTTATGTTGTCGCAGTAATCTACCTAACCTTCAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAGTGAACCAGCAATGCAAACCCACTTGGAAAAGGGGTTTATGGCTAATGGTCAATTAGAGTTGAGTCAAATTCCCTACAGAGAAGATTTGGCTGATATCCCACTACCAAAATAG 1359 0.4319 MGGVHRQSRKDNNSGRGSRHLSELCKVEYPLWVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLVTGCSTLLLLGLQRFGVRKLELLISILVFLMAGCFFGEMSYVKIPASGVLKGMFVPKLSGRGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALIVAFLINVAMISVSGTVCSAHNLSAENADNCSNLTLNSASFLFKNVFGRSSSTIYGIALLASGQSSTITGTYAGQYIMQGFLDMKMKRWIRNLVTRCIAITPSLVVSIIGGSTGAGQLIIISSMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGWGMIGINVYYLSTGFVGWLIHNSLPKVANVFIGIIVFPLMAVYVVAVIYLTFRKDTVKTYIETKSEPAMQTHLEKGFMANGQLELSQIPYREDLADIPLPK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00460 452 Pfam Natural resistance-associated macrophage protein 19 340 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 NCBIfam Nramp family divalent metal transporter 32 329 - -
Pumo8g00460 452 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 19 412 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 PRINTS Natural resistance-associated macrophage protein signature 90 111 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 PRINTS Natural resistance-associated macrophage protein signature 37 63 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 PRINTS Natural resistance-associated macrophage protein signature 278 295 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 PRINTS Natural resistance-associated macrophage protein signature 140 163 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 PRINTS Natural resistance-associated macrophage protein signature 250 269 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 PRINTS Natural resistance-associated macrophage protein signature 65 84 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 PRINTS Natural resistance-associated macrophage protein signature 310 329 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo8g00460 452 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 19 332 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00460 Pumo-Chr8 13877874 13881216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00460 19 452 Inorganic Solute Cotransporters AT1G15960 59.447 1.01e-179 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00460 K21398 - gmx:100787785 788.104