Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00404 ATGGGTGGTGAAATTGGGAGCATTGACATGAGCGGTATCACACTTGATGCAATAAGTTTTAGTTGGGCAGTAGACAGTGCGATAAGGAGTGATAGTGAGACTGCATCAAATTTGGGAGCATCCCCTGCTCACAGTTTTGCTTTGGTAGTTGACTGTACGATAAGGAGTAGAACTGTGTCAAATTTGGGAACATCCCCTGTCCATAGTTTGGCTTCGGCAGAGGACAATGCGATGATGATGAGTGATAGTGCTAGTGGAGCAGATTTCGGAACATCCTTTGTGCCAGTGGACACGAGGACTATTGCAGTGTCGAATGTCACGGGATATCTTGTTGAAGGTTTACAGTTATTTAGCCTGGCTGAGCTTGTAGCAGCCACCAACAATTTCTCACTTCACAACAAGATTGGTGCTGGATGCTTTGGAGTTGTGTACAGAGGCAAAATCGTGGATGGTCGTGAGGTAGCAATCAAGAGGGGTGAAACCTGGCCAAAGGGAAACAGTGCATTTAAGTCCAAATTGGCCTTCTTGTCTGGTTTACACCACAAGAACTTGGTTGGGCAGGTTGGATTTTGTGAGAAGAAATATGAAAGGCTATTGGTGTATGAGTACATGAAGAATGGGTCCTTGTATGATGGTTTGCATGGCAAGAACAATGTGGACAAGGGTAGCAGTGTGTTGAATTCATGGAAAATGAGGATCAAGGTTGCTTTGGATGCTTCCCGAGGAATACAATATCTTCATAACTATGCAGTTTCATCAACTATCCACAGAGATATTAAGTCTTCCAACATTCTTCTTGATGCCACTTGGACTGCAAGAGTGTCTGATTTTGGATTGTCTGTGTTGAGTCCAGAACCTAACCGTGATTACCAACCAATGAAGGCAGCAGGAATAGTTGGATACATTGATCCAGAGTACAATGGTCTAAATGTGTTGACGGCAAAGAGTGATGTGTATGGTCTTGGAGTTGTACTGCTGGAGCTTTTAACGGGAAAGAGACCTATATTCCTGTACGGGGAAGATGGAGGCACCCTATTAAGTGTGCACCATCTGGTAGACTTTGCAGTGCCTGCTATTTTGGCTGGAGAATTGGTGAAAATTTTGGATTCAAGGGTTGGACCACCGGATGCAAATGAAGCAGAGGCAGTGGAGATAGTGGCCGATACAGCTATACATTGTATGAATTTGAAAGGGGAAGATAGACCAACCATGGCTGACATTGTGGTCAATTTGGAGAGGGCTTTGACTGTTTGTGATAGTAGCCCACATGATAGCATTTATTGCGTAAGAAAAGCTGTTCTGCAACACTGCATAGCTGTGTTATACAGCTGCAATTAA 1338 0.4402 MGGEIGSIDMSGITLDAISFSWAVDSAIRSDSETASNLGASPAHSFALVVDCTIRSRTVSNLGTSPVHSLASAEDNAMMMSDSASGADFGTSFVPVDTRTIAVSNVTGYLVEGLQLFSLAELVAATNNFSLHNKIGAGCFGVVYRGKIVDGREVAIKRGETWPKGNSAFKSKLAFLSGLHHKNLVGQVGFCEKKYERLLVYEYMKNGSLYDGLHGKNNVDKGSSVLNSWKMRIKVALDASRGIQYLHNYAVSSTIHRDIKSSNILLDATWTARVSDFGLSVLSPEPNRDYQPMKAAGIVGYIDPEYNGLNVLTAKSDVYGLGVVLLELLTGKRPIFLYGEDGGTLLSVHHLVDFAVPAILAGELVKILDSRVGPPDANEAEAVEIVADTAIHCMNLKGEDRPTMADIVVNLERALTVCDSSPHDSIYCVRKAVLQHCIAVLYSCN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00404 445 SUPERFAMILY Protein kinase-like (PK-like) 111 411 IPR011009 -
Pumo8g00404 445 Gene3D Phosphorylase Kinase; domain 1 96 203 - -
Pumo8g00404 445 Gene3D Transferase(Phosphotransferase) domain 1 204 426 - -
Pumo8g00404 445 Pfam Protein tyrosine and serine/threonine kinase 130 411 IPR001245 GO:0004672|GO:0006468
Pumo8g00404 445 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524
Pumo8g00404 445 SMART serkin_6 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00404 445 ProSiteProfiles Protein kinase domain profile. 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00404 445 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 66 424 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00404 Pumo-Chr8 12406833 12416457 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00404 117 426 Receptor kinase-like Gene Family AT3G55950 64.308 5.60e-125 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo8g00404 PK_Tyr_Ser-Thr 9.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00404 - - gmx:100805573 481.485