Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00347 ATGGCAAGCACTCCCAGCATTATTTCATCACACATGAAAGCTTGGGTACCTATACCAGACATCAAGGAAGACCAGGTGCTTATCAAGGTTGTGGCTGCAGCCCTTAATCCTGTAGATTATAAGAGGGCTCTTGGCTATTTCAAGAACACTGACTCTCCCTTACCTACTGTTCCGGGGTATGATGTTGCTGGTGTGGTGGTCAGAGTGGGAAGTCAAGTGAGAAATTTCAAGGTTGGGGATGAAGTTTATGGTGATATCAATGAGAATGCTGCGAATAGTCTAAAGACCATTGGGTCTTTGGCTGAGTATGCTGCTGCTGAAGATAAACTATTGGCCCACAAACCCTCCAATTTGAGCTTTATTGAAGCTGCTGGCCTTCCTTTAGCCATCATCACTGCTTATCAAGGGCTTGAAAGAGTTGAATTTTCTGCTGGCAAATCTATTCTTGTTTTGGGAGGTGCTGGAGGAGTTGGAACCCTTATCATTCAGCTTGCCAAACATGTTTTTGGCGGATCAAGGATTGCGGCTACTTCTAGCACTGCAAAGTTGGAATTGTTGAGAAACTTGGGAGCAGACTTACCTATTGATTATACAAAGGAGAATTTTGAAGAACTGGCAGAAAAGTTTGATGTGGTGTACGATACAGTAGGGCAGAGTGAGAGGGCATTGAAGGCTGTTAAAGAAAGGGGTAAAGTTGTGAAAATAGTATTGGTGCCACCTCAAACTCCTCCAGCTATCCCCTTCTTACTCATTTCAGATGGTGCTGTGTTAGAGAAACTGCAACCTCACTTAGAGAGTGGGAAAGTGAAGCCTGTGTTGGATCCTATAAGTCCCTTTCCATTTTCTCAAACTGTGGAGGCATTTGCATACTTGAAGACTAGTAGGGCCATTGGGAAAGTAGTCATACATCCCATCCCATAA 921 0.4397 MASTPSIISSHMKAWVPIPDIKEDQVLIKVVAAALNPVDYKRALGYFKNTDSPLPTVPGYDVAGVVVRVGSQVRNFKVGDEVYGDINENAANSLKTIGSLAEYAAAEDKLLAHKPSNLSFIEAAGLPLAIITAYQGLERVEFSAGKSILVLGGAGGVGTLIIQLAKHVFGGSRIAATSSTAKLELLRNLGADLPIDYTKENFEELAEKFDVVYDTVGQSERALKAVKERGKVVKIVLVPPQTPPAIPFLLISDGAVLEKLQPHLESGKVKPVLDPISPFPFSQTVEAFAYLKTSRAIGKVVIHPIP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00347 306 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 14 306 IPR044626 GO:0016628
Pumo8g00347 306 SUPERFAMILY GroES-like 16 150 IPR011032 -
Pumo8g00347 306 CDD MDR_like_2 16 302 - -
Pumo8g00347 306 Gene3D - 15 302 - -
Pumo8g00347 306 Pfam Zinc-binding dehydrogenase 189 302 - -
Pumo8g00347 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 118 256 IPR036291 -
Pumo8g00347 306 Gene3D - 137 253 - -
Pumo8g00347 306 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 145 166 IPR002364 GO:0008270|GO:0016491
Pumo8g00347 306 SMART PKS_ER_names_mod 9 302 IPR020843 GO:0016491
Pumo8g00347 306 Pfam Alcohol dehydrogenase GroES-like domain 24 89 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00347 Pumo-Chr8 11219897 11222629 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00347 24 216 Monolignol Biosynthesis Gene Families AT3G19450 25.664 9.10e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00347 K18980 - gmx:100791274 471.47