Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00337 ATGTCAGACAACATCGATCCACAGACAACGTACGATGTTTTTGTTAGCTTCAGGGGCCAGGACATCCGTCGCGGATTTCTTAGCCATTTGAGAGAGGCTTTTAAACGTAAGCAAATAAATGCCTTTATAGATGATCAACTTGAGAGGGGACATGAAATTTGGCCATCACTTGTTGGAGCAATCGAAGGATCATCCATTTCGTTGATCATATTCTCACAAGGCTATGCTTCTTCACGTTGGTGTTTAGAAGAACTTGTGACAATACTTCATTGCAAAGAGAAATATGGACAAATTGTAATCCCTGTTTTCTACGAGGTTGAACCCACACATGTAGGACATCAATCTTCGGAGAGTTACAAAAAGGCATTTGATGAGCAAAAAGCAAAATATGAGACCACCAAGGTGCAAATGTGGAGAGATGCTTTGAATAAATCTGCAAAAATATCCGGCATTGAGTCATCAAAGTTTCTGGATGATGCTAAGCTACTTGAGGAAATCATCAAACTTGTTATGATGAGGATGGGTAAACCCTTGGTTAACTCAAAAGGAATTGTTGGAATTGAAAAAAAAATTGCAGATGTAGAATCATTGATACGTAAAGAGCCAAAAGATACACGTCTTATTGGAATTTGGGGTATGGGCGGTATCGGCAAGACAACCCTTGCAAAAGAAGTATTTAACAACTTACGGTCTGAATATCAAGGTTCATGTTTTTTAGCCAACGAAAGAGAACAATCAGGAAAAAATGGAATAATTTCTTTGAAGAAAGAAATTTTTACTGAACTGTTAGGACATGCTCCAAATTCATTTTTCGATGATAGAATTCGTCGTATGAAGGTTCTTATTGTTCTTGATGATATGAATGATTTTGGTCACCTATCTGAATTATTGGGACCTCTTGATAATTTTGGATCAGGAAGTACAATAATTGTAACAACTAGAGACAAGCAAGTGCTTAATGCTAACAAAGCTGATGCGATATACCAGCTTGGAGAATTCAGTTTTGATAATGCACTTGAACTTTTCAAATTGAATGCCTTTAACCAGAGTGATCATCCAATGGAGTACGATGATCTATTAGAAAGGGTGGTCAATTATGCCCAAGGCATTCCATTAGTTGTTAAAGTTTTGGCTTGTTGTCTTTACGGAAAAAAGAAGGAAGTATGGGAAAGTGAGCTTAACAAGCTTGGAAAAATGCCTCTTCAAAAAGTTTATGATATAATGAAACTGAGTTATGATGATCTAGATCGTAAAGAAAAACAAATATTTCTAGATCTTGCATGTTTCTTTCTTAGATTAGATAGAAAGCTAACGGTGGGTTTTCTAATATCTGTATTAAGAAATGGTGAAAGTGATAAGTCAGTGGCTGCTGGGTTAGATAGGCTAATAGATAAAGCTCTTATAACTTTCTCGGAAGATAATTTTGTATCTATGCATGATAGTTTACAAGAAATGGCTTGGGAAATTGTTTGTCAAGAATCTATGGAAGACCCTGGAAGCCGTAGTCGGTTATGGATTCCTGATGACGTTTGTGAAGCATTGAAAAATGACAAGGGTACTCTGGCCATTAGAAGCATACTGCTTCACTTGCCTCGAACCAAGAAGCAAAAATTAAGCCTTCACATACTTGCTAAGATGAGCAGACTACGATTTCTGGAAATTTCTGGGCAAGTCGAATATGATAGGTTGAATGACAACCAGCACAAGTGGCTGAGTTGGCTGAAGCTGAGTTGGCCGAAGCTGCAAAAAGCTTGGAGTGATGATATTGTTGCTAAAGGGCTTAAATTTTGGACAAGTGAACTAATATTTCTTAGATTGGGAGTATTACCCTCTAAAATCCTTGCCAGAGAATTTTTCTGGCGAAAAACTTGTAATATTGAAATTACAAAGAGGCAATGTGAAAAAACTTTGGGATGGAGTAAAGAATCTGGTGAATTTAAAAGAAGTTGA 1950 0.3703 MSDNIDPQTTYDVFVSFRGQDIRRGFLSHLREAFKRKQINAFIDDQLERGHEIWPSLVGAIEGSSISLIIFSQGYASSRWCLEELVTILHCKEKYGQIVIPVFYEVEPTHVGHQSSESYKKAFDEQKAKYETTKVQMWRDALNKSAKISGIESSKFLDDAKLLEEIIKLVMMRMGKPLVNSKGIVGIEKKIADVESLIRKEPKDTRLIGIWGMGGIGKTTLAKEVFNNLRSEYQGSCFLANEREQSGKNGIISLKKEIFTELLGHAPNSFFDDRIRRMKVLIVLDDMNDFGHLSELLGPLDNFGSGSTIIVTTRDKQVLNANKADAIYQLGEFSFDNALELFKLNAFNQSDHPMEYDDLLERVVNYAQGIPLVVKVLACCLYGKKKEVWESELNKLGKMPLQKVYDIMKLSYDDLDRKEKQIFLDLACFFLRLDRKLTVGFLISVLRNGESDKSVAAGLDRLIDKALITFSEDNFVSMHDSLQEMAWEIVCQESMEDPGSRSRLWIPDDVCEALKNDKGTLAIRSILLHLPRTKKQKLSLHILAKMSRLRFLEISGQVEYDRLNDNQHKWLSWLKLSWPKLQKAWSDDIVAKGLKFWTSELIFLRLGVLPSKILAREFFWRKTCNIEITKRQCEKTLGWSKESGEFKRS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00337 649 Gene3D - 333 416 IPR042197 -
Pumo8g00337 649 Gene3D - 174 327 IPR027417 -
Pumo8g00337 649 Pfam TIR domain 11 180 IPR000157 GO:0007165
Pumo8g00337 649 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 584 IPR044974 GO:0006952
Pumo8g00337 649 Pfam NB-ARC domain 195 413 IPR002182 GO:0043531
Pumo8g00337 649 ProSiteProfiles TIR domain profile. 9 174 IPR000157 GO:0007165
Pumo8g00337 649 SUPERFAMILY "Winged helix" DNA-binding domain 403 515 IPR036390 -
Pumo8g00337 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 426 IPR027417 -
Pumo8g00337 649 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 175 - -
Pumo8g00337 649 SMART till_3 10 148 IPR000157 GO:0007165
Pumo8g00337 649 PRINTS Disease resistance protein signature 544 560 - -
Pumo8g00337 649 PRINTS Disease resistance protein signature 367 381 - -
Pumo8g00337 649 PRINTS Disease resistance protein signature 274 288 - -
Pumo8g00337 649 PRINTS Disease resistance protein signature 207 222 - -
Pumo8g00337 649 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 150 IPR035897 -
Pumo8g00337 649 Gene3D - 8 173 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00337 Pumo-Chr8 10689944 10698113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00337 11 554 WRKY Transcription Factor Family AT4G12020 28.674 3.81e-57 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00337 - - vun:114164115 714.146