Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00332 ATGTCATCACAGACCGCCGCCACGGAGGCGCCGCTGCTCCTCTCCCGCGCCGATGCCGGCCGAACCCCCGCGCTAGCGCTCCTCCTCGGCCGCGCCGGCCGCCGCGGCCCCTCCATGCTGGTGCGGGAGACGGCGGCGCGCGAGCTCGAGGAGCGCCGCGCCGACTGGGGCTACTCCAAGCCGGTGGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTCGTCGTCTCGGCGGCGATGCTCGCATGCACCACCGCCGAGCGGCCGAACACGCCGATCCGCGTGTGGATCGTCGGCTACGCGCTGCAGTGCCTCGTGCACGTGCTGCTCGTGTGGCTCGAGTACCGGCGCCGGGGCAGGAGGGACTCGCGCCGCGGCCAGAGGGCGCGGGACGTGGAGAGCGACACCGGCAGCGACGACGACGGCGACGTCAGTGACGACGGAGATGGGAGCTCTGGCAACTCGTCTCGCTCCGGATTCACAAAACGATGTGAATCGTTAAATACTGGGGTTTCATTCCTTTGGTGGATAGTGGGCTTTTATTGGGTTGTCTCTGGTGGCGATATACTTCTGCAAGATGCCCCTCGATTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTCTTGGCGTGCTTGATTGGTATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGCATGCTTCCAAAATACAGATTTCGAAGCAATGAGGATAAGCCTAGTGGTGGAACTGGATCAATGGTTCCCATAGAAACCAGCAGTGCATACTTGGCATATGAACGGACACTTTTGCCCGAGGATGCGGAATGCTGTATATGCCTCTGTTCATATGAGGATGGAGCAGAGCTACACGCTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATTGTTAAATGGCTGAAGATGAATGCAACTTGTCCTCTCTGTAAGTACAATATTCTCAAGGGAAACGAACAAGTGTGA 1044 0.5728 MSSQTAATEAPLLLSRADAGRTPALALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAAMLACTTAERPNTPIRVWIVGYALQCLVHVLLVWLEYRRRGRRDSRRGQRARDVESDTGSDDDGDVSDDGDGSSGNSSRSGFTKRCESLNTGVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRSNEDKPSGGTGSMVPIETSSAYLAYERTLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00332 347 SMART ring_2 296 336 IPR001841 -
Pumo8g00332 347 CDD RING-H2_PA-TM-RING 295 337 - -
Pumo8g00332 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 345 IPR013083 -
Pumo8g00332 347 Pfam Ring finger domain 295 337 IPR001841 -
Pumo8g00332 347 MobiDBLite consensus disorder prediction 124 161 - -
Pumo8g00332 347 FunFam E3 ubiquitin protein ligase RIE1 276 344 - -
Pumo8g00332 347 SUPERFAMILY RING/U-box 283 341 - -
Pumo8g00332 347 PANTHER TARGET OF ERK KINASE MPK-1 32 345 - -
Pumo8g00332 347 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00332 Pumo-Chr8 9989545 9997843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00332 2 346 C3H Transcription Factor Family AT1G68070 68.195 8.19e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00332 - K13148 gmx:100808028 541.576