Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00297 ATGATCCATCCCCAGGAGACGTTTTTCGGGTTTTATACAATGAAGGGAACACAAAAGTTGTTCCGATCTGGACCGTGGAATGGTCTATATTTTAGTGGAATGCCAGATCTACAGAATAACACCATTTTTGGCTTGAATTTTGTCAGCAATAAGGATGAGATTTACTTCACCTTTAGCGTAGTAAATAATTTTCTCATCGCCAGGACTGTAATAAACCAAACTACAGGTGCAAGTTATCGCTATGTATGGGAAGAGGACGATCAAAATTGGAGGGCGTATAGACCCTTTCCGGGTGACTTTTGTGACACTTATGGCCTCTGTGGACCCAACGGGAACTGTGTAAGTACTCAATCCCAAGTCTGTCAATGTTTAAAAGGTTTCAGTCCAAAGTCACCACAAACTTGGGTTTCATCTGGGTGGAACCGTCATGGATGTGTCCGCAATAAACCGTTAAGTTGCAGCAACGACAAAGACAAAGACAAAGATGGGTTTGTCAAATTTGAAGGCCTCAAAGTTCCGGATACTACACATACTTGGTTGGATGAGAGTATTGGTCTAGAGGAATGCAGAGTCAAGTGCTTGAATAATTGTTCTTGCATGGCCTATACTAATTCAGACATAAGAGGTGCAGGTAGTGGTTGTGTCATGTGGTTTGGAGATCTCCTTGACATGAGACAGTTTGAGAATCGTGGCCAAGATCTATATATCAGGATGCCTGCTTCAGAGTTAGTACCTGTATATAAGCACAAGAAGGACGCGCCAACGATAGTTGCTTCCACCATTGCTGCAATTTGTGGGATTCATATTCTAAGTACATATTTTATTTGCAGAAGAATCCGGAGGAACAATGCAGAGAATTCATTGACAGAAGAAAACAATGAAAAACAAATGGATGATCTGGACGTCCAATTGTTTGATTCACTGACAATTGCAACTGCCACTAATGACTTCTACATAGAAAATAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAGGGGGATATTAATGGATAGGCAAGAAATTGTAGTAAAGACTCTATCAAGCAGCTCATGGCAACGAGTGACAGAGTTTATAAATGAAGTAAAATTGATTGCAAAACTTCAGCATAAAAATCTTGTAAAACTTATTGGTTGTTGCATTCAAGGACGAGAAAAAATGCTAGTTTATGAGTACATGGCAAACGACAGCCTAAACTCCTTCATATTTGATGAAACAAAAAGTAAATTCCTAGAGTGGCCTCAACGCTTCCACATAATCTGTGGAATCGCAAGGGGGCTTATGTATCTTCATCAAGATTCCCGATTGAGGATTATCCATAGAGATCTCAAAGCAAGTAATGTTTTGCTTGATGAAAACTTGAGTCCAAAAATATCAAATTTTGGAATGGCCAGAATTTTTGGTGCAGACCAGATTGAAGAAAACACACGTAGAATAGTTGGGACCTACTTTGGGATTTTAGTGCTGGAGATTGTATGTGGCAAGAGAAACAGAGGACTTTATCACACAGATAGGAATCTTAACCTCGTTGGTCATCAGTACCCAGAAGATAGGCCTACAATGGCGTCGGTGATTCTAATGCTGGAGAGTCACATGGAATTGGTTGAGCCTAAAGAACATGGTTTCATTCCCAGAAATGTTCCAGTTGAAGAAGATTTACACACAAGTTCAACCAATTATGTAACAATTACCATGTTAGAAGCTCGATGA 1710 0.3994 MIHPQETFFGFYTMKGTQKLFRSGPWNGLYFSGMPDLQNNTIFGLNFVSNKDEIYFTFSVVNNFLIARTVINQTTGASYRYVWEEDDQNWRAYRPFPGDFCDTYGLCGPNGNCVSTQSQVCQCLKGFSPKSPQTWVSSGWNRHGCVRNKPLSCSNDKDKDKDGFVKFEGLKVPDTTHTWLDESIGLEECRVKCLNNCSCMAYTNSDIRGAGSGCVMWFGDLLDMRQFENRGQDLYIRMPASELVPVYKHKKDAPTIVASTIAAICGIHILSTYFICRRIRRNNAENSLTEENNEKQMDDLDVQLFDSLTIATATNDFYIENKIGEGGFGPVYRGILMDRQEIVVKTLSSSSWQRVTEFINEVKLIAKLQHKNLVKLIGCCIQGREKMLVYEYMANDSLNSFIFDETKSKFLEWPQRFHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDENLSPKISNFGMARIFGADQIEENTRRIVGTYFGILVLEIVCGKRNRGLYHTDRNLNLVGHQYPEDRPTMASVILMLESHMELVEPKEHGFIPRNVPVEEDLHTSSTNYVTITMLEAR 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00297 569 ProSiteProfiles Protein kinase domain profile. 317 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00297 569 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 152 238 - -
Pumo8g00297 569 SMART serkin_6 317 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00297 569 SMART ntp_6 159 238 IPR003609 -
Pumo8g00297 569 Gene3D Transferase(Phosphotransferase) domain 1 393 484 - -
Pumo8g00297 569 SUPERFAMILY Protein kinase-like (PK-like) 303 561 IPR011009 -
Pumo8g00297 569 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 508 - -
Pumo8g00297 569 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 281 392 - -
Pumo8g00297 569 ProSiteProfiles PAN/Apple domain profile. 153 239 IPR003609 -
Pumo8g00297 569 Gene3D Phosphorylase Kinase; domain 1 277 392 - -
Pumo8g00297 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Pumo8g00297 569 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 393 484 - -
Pumo8g00297 569 Pfam PAN-like domain 158 224 IPR003609 -
Pumo8g00297 569 CDD PAN_AP_plant 150 239 - -
Pumo8g00297 569 ProSiteProfiles EGF-like domain profile. 97 133 IPR000742 -
Pumo8g00297 569 Pfam Protein tyrosine and serine/threonine kinase 319 470 IPR001245 GO:0004672|GO:0006468
Pumo8g00297 569 Pfam S-locus glycoprotein domain 21 131 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00297 Pumo-Chr8 8831452 8838290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00297 253 546 Receptor kinase-like Gene Family AT4G23190 41.341 6.15e-78 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo8g00297 PK_Tyr_Ser-Thr 1.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00297 - - gmx:100802962 853.203