Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00285 ATGGATCAGCGAAAGCCACGAGGCTCATCCGCTTCAGATTCACCACCCCAACAACACGTCACTCTCACCTCTAACCGCTTCCGCAACAACCCTCCTCAAGCTGTGAGGGAGAGAGAGAAAGAGAGGGATGAAGGGGAAAACGAGGAGGATCCAAGTGCCGCGCGAAAGTTTCTAAAAGCTGACCGCGAGAAACTCAGAAGGGATCGACTCAACGAACACTTCCAAGAGTTGGGAAACACGTTAGATCCTGATAGACCAAAGAATGACAAGGCAACTATCCTCACTGAGACCATCCAAATGCTAAAGGACTTCACTGCTGAAGTTAATAGGCTTAAAACGGAGCATAAAGCACTTTCTGAGGAGTCACGTGAACTAATGCAAGAAAAGAATGAACTCAGAGAAGAGAAGACATCTCTTAAATCTGATATAGAAAATCTTAATGCCCAGTATCAGCACAGAGTCAGAATCATGTTCCCATGGACTGCAATTGACCATTCTGTTGTCATTAGTCCACCTTACTCATATCCAGTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCTTCTCTTCAACCTTTTCCTTTCTTTGGAAATCAGAACCCTGGTCACATTCCTAATCCTTGTTCAATGTATGTCCCATATTCTACTCCAACTAACCCCCCAGTTGAGCCGCCATCAACGATGTATGCTTCCACGTCCCACACATCGAACCAAAAGGAATCCCGTAGCAAGTCACCAGGTCACAGAAGGTCCAGTGATGCTGAAAGAAGTAGCGAGTCTCATGATGTGGCCACAGAGCTTGAACTTAAGATGCCTGGATCATCATCAACACAACAGGATTGCACTTCTGGAGGAAGGAAGGGCAAGCATCCAGTGATGAAGGATAGAACCATCGTAGGTGGGAGTGCTTCAAGCCAGTATTCTTCATCTCAAGGACTCCAAGATAGCTCCAACAGCGTGGGTGACATCCCAAAGACTGATAATTGA 993 0.4642 MDQRKPRGSSASDSPPQQHVTLTSNRFRNNPPQAVREREKERDEGENEEDPSAARKFLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETIQMLKDFTAEVNRLKTEHKALSEESRELMQEKNELREEKTSLKSDIENLNAQYQHRVRIMFPWTAIDHSVVISPPYSYPVPIPIPPAPISIHPSLQPFPFFGNQNPGHIPNPCSMYVPYSTPTNPPVEPPSTMYASTSHTSNQKESRSKSPGHRRSSDAERSSESHDVATELELKMPGSSSTQQDCTSGGRKGKHPVMKDRTIVGGSASSQYSSSQGLQDSSNSVGDIPKTDN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00285 330 Coils Coil 94 149 - -
Pumo8g00285 330 MobiDBLite consensus disorder prediction 221 330 - -
Pumo8g00285 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 124 IPR036638 GO:0046983
Pumo8g00285 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 104 IPR011598 GO:0046983
Pumo8g00285 330 MobiDBLite consensus disorder prediction 8 31 - -
Pumo8g00285 330 MobiDBLite consensus disorder prediction 227 242 - -
Pumo8g00285 330 MobiDBLite consensus disorder prediction 1 61 - -
Pumo8g00285 330 MobiDBLite consensus disorder prediction 301 330 - -
Pumo8g00285 330 MobiDBLite consensus disorder prediction 243 268 - -
Pumo8g00285 330 Pfam Helix-loop-helix DNA-binding domain 59 103 IPR011598 GO:0046983
Pumo8g00285 330 CDD bHLH_AtILR3_like 59 133 - -
Pumo8g00285 330 MobiDBLite consensus disorder prediction 32 61 - -
Pumo8g00285 330 PANTHER TRANSCRIPTION FACTOR BHLH121 12 328 IPR044579 GO:0003700|GO:0006879
Pumo8g00285 330 MobiDBLite consensus disorder prediction 272 286 - -
Pumo8g00285 330 Gene3D - 54 129 IPR036638 GO:0046983
Pumo8g00285 330 SMART finulus 60 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00285 Pumo-Chr8 8518150 8522260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00285 45 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 55.417 1.26e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g00285 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00285 - - gmx:100818281 489.189