LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g00260	ATGCCACCACCAAAGTCAACAGTTCTGGCTCCCTTAGTAATCACCTCAAAAGGTGAACTTCTCCTCCATGGTTCACCCTTTCAAGGTGCTGAAAATGTTACATCCTCCACTTCCAATTCAACCCAACTACTCCTTGAAAACGTTGGAAACTTGGTCTTTGGGAACTGGAGCAGCTTCAAGAACCCCACCAGCACCGTTTTGCCCAACCAGAACTTCAGCACAGGGTTTGAGCTTCTCTCCAACAATGGGAAATTCAGGTTCATCAACTCAAAGTCTCTGGTCCTCAACTCCACCTCTGCTCAATACTATGACACCCCAAGTCAATTGCTGAGCATGGATGATAATGGGAAAATGAGCATGGTAGGTAACTCTTTCCTCACTTCAGATTATGGTGACCCCAGGTTCAGAAAACTGGTCCTTGATGATGATGGGAATCTCAGGATCTATAGCTTCTACCCTGAGCAGAACAACCAGTGGGTTGAGGTTTGGAAAGGGATCTGGGAGATGTGCAAAATTAAGGGTAAATGTGGGCCTAATGCAATTTGTGTGCCCAAAGAGGATTTGAGCACTTCCACTTATTGTGTCTGTCCATCTGGGTTCACCCCAATCCAAAATGATCCTGAAGAGGAGGGTTGCACAAGGAAAATCCCTCTTTCCCAACACACCCAATTTCTGAGGCTGGATTATGTGAACTACTCCAGTGATGGTAGTTCGAAGCAAATCCTAGCTCAGAACTTCACAATCTGTGAGGCCAGTTGCTCAAGAGACAAAGCCTGTCTCGGGTTTGGCTTCAAGTATGATGGATCTGGCTACTGTGTGTTGGTGAGTGGGACAACTCTTCAATATGGGTACTGGTCACCAGGCACTGAGACTGCCTTGTTTGTGAAGGTTGACAAATCTGAGTCATCACCCTCCAACTTCATTGGCATGACTGAGGTGATGCAAACCACATGTCCTGTGAATATAAGCCTCCCACTGCCTCCAAAGGACTCAAACACCACTGCTAGAAACATTGCCATAATCTGCACCCTTTTTGCTGCAGAACTCATAGCTGGGGTGGCCTTCTTCTGGTCCTTCCTCAAGAGGTACATCAAGTATAGGGACATGGCCACAACATTAGGCCTTGAGCTTCTCCCTGCTGGGGGCCCCAAGAGGTTCACCTACTCAGAAATCAAGGCTGCCACCAATGACTTCTCCAACCTCATAGGCAAAGGAGGCTTTGGAGATGTCTACAAAGGTGAGTTACCAGACCATAGAGTGGTGGCAGTGAAGTGCCTCAAGAATGTCACAGGAGGAGATGCTGAGTTTTGGGCAGAAGTCACAATCATTGCCAGAATGCACCACCTCAACTTGGTGAGGCTGTGGGGCTTCTGTGCTGAGAAAGGCCAAAGGATACTTGTCTATGAACACATCCCTGGTGGCTCATTGGACAAGTACCTCTTCAGGGTCAACAAGTCTCATCATCTCAAAGACCAATCAAGTCCAAACACACCACAACCAAGGCCTGTTTTGGATTGGAGCATGAGGTACAGAATAGCCCTTGGTGTGGCAAGGGCTATTGCTTACTTACATGAGGAGTGTTTGGAGTGGGTTTTGCACTGTGACATCAAGCCTGAGAACATTTTACTAGGTGATGATTGTTGTCCCAAGATATCAGATTTTGGGCTGGCCAAGTTGAGGAAAAAAGAGGACATGGTGACCATGTCAAGGAGGAGGGGCACTCCAGGGTACATGGCACCTGAATGGATCACTGCTGACCCAATTACCTCAAAAGCTGATGTGTATAGTTTTGGCATGGTGCTTTTGGAGCTTGTGAGTGGGATTAGGAACTTTGAGATTCAAGGATCTGTGGTTAGGAGTGAGGAGTGGTACTTCCCTGGTTGGGCCTTTGATAAGATGTTTAAGGAGATGAGAGTGGAGGACATTTTGGATGGTCAGATTAAGGATGCTTATGATAGTAGGGCCCATTTTGACATGGTTAATAGGATGGTGAAGACTGCAATGTGGTGTCTACAGGATAGGCCTGAGCTGAGGCCCACTATGGGGAAGGTGGCAAAGATGTTGGAAGGGACTGTGGAGATCATTGAGCCCAAAAAGCCCACTGTTTTCTTCCTTGGGGAAGAGTAG	2127	0.4734	MPPPKSTVLAPLVITSKGELLLHGSPFQGAENVTSSTSNSTQLLLENVGNLVFGNWSSFKNPTSTVLPNQNFSTGFELLSNNGKFRFINSKSLVLNSTSAQYYDTPSQLLSMDDNGKMSMVGNSFLTSDYGDPRFRKLVLDDDGNLRIYSFYPEQNNQWVEVWKGIWEMCKIKGKCGPNAICVPKEDLSTSTYCVCPSGFTPIQNDPEEEGCTRKIPLSQHTQFLRLDYVNYSSDGSSKQILAQNFTICEASCSRDKACLGFGFKYDGSGYCVLVSGTTLQYGYWSPGTETALFVKVDKSESSPSNFIGMTEVMQTTCPVNISLPLPPKDSNTTARNIAIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEHIPGGSLDKYLFRVNKSHHLKDQSSPNTPQPRPVLDWSMRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDCCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGIRNFEIQGSVVRSEEWYFPGWAFDKMFKEMRVEDILDGQIKDAYDSRAHFDMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEIIEPKKPTVFFLGEE	708

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g00260	708	Gene3D	Phosphorylase Kinase; domain 1	370	470	-	-
	Pumo8g00260	708	SUPERFAMILY	alpha-D-mannose-specific plant lectins	12	77	IPR036426	-
	Pumo8g00260	708	Gene3D	Transferase(Phosphotransferase) domain 1	471	699	-	-
	Pumo8g00260	708	Pfam	S-locus glycoprotein domain	132	202	IPR000858	GO:0048544
	Pumo8g00260	708	ProSiteProfiles	EGF-like domain profile.	166	206	IPR000742	-
	Pumo8g00260	708	FunFam	Serine/threonine-protein kinase	471	699	-	-
	Pumo8g00260	708	PIRSF	SRK	3	708	IPR024171	GO:0004674
	Pumo8g00260	708	ProSitePatterns	Protein kinases ATP-binding region signature.	402	424	IPR017441	GO:0005524
	Pumo8g00260	708	ProSiteProfiles	Protein kinase domain profile.	396	692	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo8g00260	708	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	531	543	IPR008271	GO:0004672\|GO:0006468
	Pumo8g00260	708	CDD	STKc_IRAK	402	690	-	-
	Pumo8g00260	708	FunFam	S-receptor-like serine/threonine-protein kinase	368	470	-	-
	Pumo8g00260	708	Pfam	Protein kinase domain	400	684	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo8g00260	708	SUPERFAMILY	Protein kinase-like (PK-like)	379	689	IPR011009	-
	Pumo8g00260	708	CDD	EGF	170	201	-	-
	Pumo8g00260	708	ProSiteProfiles	PAN/Apple domain profile.	212	298	IPR003609	-
	Pumo8g00260	708	SMART	serkin_6	396	688	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo8g00260	708	PANTHER	OS07G0415500 PROTEIN	15	703	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo8g00260	Pumo-Chr8	7491051	7494140	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo8g00260	311	700	Receptor kinase-like Gene Family	AT4G18250	36.790	2.77e-76	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Pumo8g00260		Pkinase	4.1e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g00260	-		-	gmx:100775518	1303.12