Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00253 ATGATGACTCCAAACTTGAATCTGGAACCAGAAGATGATTCAAAAGTCCTCAGCCAAGTAGGTTCCGATAAATCAATACAAGAAACATCGCATGATGTTACCAAGGACAGCACCACCACTTCCTCCTGTCTTACCAAGGCTGATCCTGACCCAGGTTCTGTTTCCCTTGACTTGACCCTCAACTTCAATCCCAGTGATGAAGAGTTGAAAGTTACAAGTGACACTAACTGTGAAGTAGGACCTGAAGCTCATGCCTCAGCATCAGCAATTCCTAGAGTTTTCTCTTGTAATTATTGCCAGCGGAAATTCTTTAGCTCGCAGGCATTAGGTGGCCACCAGAATGCTCATAAAAGGGAGAGGACAATGGCGAAGCGTGCAATGCGAATGGGGATGTTCGCTGAAAGGTACACAAGCCTGGCATCTCTGCCTCTCCATGGTTCCGCTCTTCGGTCGCTTGGACTCGAAGCTCATGCTGCAATGCACCAAGGACATGTGCATCATTCAATGAGGGCTCCTGATATGAGAGCTGCAGCGAAATTCGGTAAAGACTATTTCCGGATTCCGATCTTTGTGGAAGATGATGATGTTGGTCTATTTTGGCCTGGAAGTTTCAGACAGACTGGTGAAAGGGGTGGTGTTAATTTGAGGCATGGTGAGCATGCTCATAATTCAAATACTAGTTTTGTAGTAGCAACTGCACCTCCAGCACAAACATCTGCATCTCCTGATCTCACTCTGAGGCTTTGA 747 0.4632 MMTPNLNLEPEDDSKVLSQVGSDKSIQETSHDVTKDSTTTSSCLTKADPDPGSVSLDLTLNFNPSDEELKVTSDTNCEVGPEAHASASAIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFAERYTSLASLPLHGSALRSLGLEAHAAMHQGHVHHSMRAPDMRAAAKFGKDYFRIPIFVEDDDVGLFWPGSFRQTGERGGVNLRHGEHAHNSNTSFVVATAPPAQTSASPDLTLRL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00253 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 22 168 IPR044246 GO:0009788
Pumo8g00253 248 FunFam Zinc finger protein 2 72 140 - -
Pumo8g00253 248 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Pumo8g00253 248 MobiDBLite consensus disorder prediction 1 50 - -
Pumo8g00253 248 Gene3D Classic Zinc Finger 83 140 - -
Pumo8g00253 248 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Pumo8g00253 248 MobiDBLite consensus disorder prediction 19 48 - -
Pumo8g00253 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00253 Pumo-Chr8 7329841 7335769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00253 92 248 C2H2 Transcription Factor Family AT1G66140 46.774 7.00e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g00253 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00253 - - gmx:100777133 459.144