Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00224 ATGGCTGGTAAAAGTTCAATTACTCGGCGAGCAGCGAGACATGGCTCGCACAAACTGAGTAAATTTGATTTGGCTGATCTAGAATGGACCAATAGGATTCCAGAGTGTCCAACATACCACCCATCAGTGCATGAGTTTGAGCATCCCTTAGTTTATCTGCAGAAGATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGAAAGAGAAAAAAGATTTCAAGTTTGAAACAAATATACAGCCTCTTCGTCTTTCTAAATGGAATGAAAAGGATATAATAACCTTTTCTATGAGAGGCAGAAAATATACATATCATGAATTTGAGGCTCTTGCAAACAAGGCTTTTCTCAGTAGATTTCACAGTTCTAGAGGCCTTCCTTCTTCATATGTGGAAAAGGAGTTCTGGCATGAGATGGCTCATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGGTTGTTGTTTTTCAGACCTTATGCTTACTCCATTTCTTTTTAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATCATCACTCAGGTGCAAATAAAACTTGGTATGGCGTGCCTGGCTATGCAGCATCACAATTTGAAAAGACTGTCTTACAGCATGTGTATTGCAGCAAGATCTTAACAAAACATGGAGAGGATGGAGCTTTCAAGTTTCTTGCACAAAAAACAACCATGTTCCAACCAAATGTCCTGCTGCAACATAATGTGGCAGTTTACAAGGCTGTACAGAAGCCAGGAGAGCAAGGCCAGGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTAATGGAGATTGGTTTCCACTTGGGGCTGCAGCTAGCAGGCGTTATGCACATCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTGGTTTACAGGTCCTCAAGAGTCAGAAGTTCCAAGAACAAGCCCTGA 1116 0.4059 MAGKSSITRRAARHGSHKLSKFDLADLEWTNRIPECPTYHPSVHEFEHPLVYLQKIAPEASKYGICKIVSPIAASNPAAFVLMKEKKDFKFETNIQPLRLSKWNEKDIITFSMRGRKYTYHEFEALANKAFLSRFHSSRGLPSSYVEKEFWHEMAHGEKGTVEYGVNVEGSAFSCDPDDRLGTSKWNLKVVVFQTLCLLHFFLGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPGYAASQFEKTVLQHVYCSKILTKHGEDGAFKFLAQKTTMFQPNVLLQHNVAVYKAVQKPGEQGQGFNCGEAVNFANGDWFPLGAAASRRYAHLRMMPLIPYEELLCKEAMLVYRSSRVRSSKNKP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00224 371 Gene3D Cupin 36 370 - -
Pumo8g00224 371 SUPERFAMILY Clavaminate synthase-like 148 353 - -
Pumo8g00224 371 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 364 - -
Pumo8g00224 371 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Pumo8g00224 371 SMART JmjN_1 35 76 IPR003349 -
Pumo8g00224 371 Pfam JmjC domain, hydroxylase 209 307 IPR003347 -
Pumo8g00224 371 SMART cupin_9 180 337 IPR003347 -
Pumo8g00224 371 ProSiteProfiles JmjC domain profile. 177 337 IPR003347 -
Pumo8g00224 371 Pfam jmjN domain 37 69 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00224 Pumo-Chr8 6581154 6583763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00224 19 361 JUMONJI Transcription Factor Family AT2G34880 30.861 6.76e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo8g00224 JmjC 1.4e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00224 - - gmx:100793144 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00224 8 6581154 6583763 Pumo8g00224 8 6581154 6583763 ECH