Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00204 ATGGATTTGGTTGTTCCTGAAGAAGAACTAAGCTTAGATTTGAGACCCTCTTTTGTTCCCAAAACCATCACTGATCTTCTCTGCCACCTTTCCACCACCCCAAATGCATCACACAAGGTGTCCTTGCTAGATGACTTTGTCAACAGATTGGAACTCGAATTGGCCAAGATCCAAGCATTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAATGATGCAATTTCAGCTTTGAAGGTGGAATCAGCAAAATGCAGGGCTTGCAAGTCTGAGCCAGTGTTGGAGGAGTTCATTCCTCTGAAGAAAGAGTGTGATCAGAGGGAGGAAAGTGAGAAGGAGAAGGAATGCAGGGACAAGAAGAATTGGATGAGTTCTTTTCAGCTTTGGAACACTGATGATAAAGCTGATAATAATAACAATGCATATGAATGTGACAAAACACAGAACTATAAAGTTGAAAACATGAATAATGGACAAGAAAGACAATCTGTGGCCAAGGACTTGTTCCAATATGGTAGAAATAGAAATGGAGAGAGGGGCTTTGTTATGCCTTTTTCCTCTTACCCTGCAACAAAGGAAGAGAAGGAAGATTGTGTTGTCAATGGACTTTCTCTTCAGACACCTGGAACTGCAGTGAAAAGCACAAGGGAGGGATCTGGTTGCAGAACCAGCTCTTGCAGGGTGGTTTCCTCCACTCCTTCACCGCCTCATCAGCCACAAAATGGCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATAACCGGTTTGTTAAGGCTTTAATGGAGCTTGGAGGTTCTCAAGCAGCTACTCCAAGGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAATGATGAAGTAAAGAGTCATTTACAAGTGAGTTCATATTGTTCCATCTCCCCTTACTGCCTTCTATTGTTAGATTTGAGATTAACATATGGTTGTTTATTATTGCAGAAATACCGACTTCATCCTCGGAGAGTTCCAGTTGCTACAGCTGCAAATTCTAATCGGTCTGCTGTAGATCTTGGAGGCTTGTGGATGCACAATAAATCCTTGAAGGGTAGCAGTTCTGGTTCTCCTCAGGGCCCTCTCCAATTAGCTACACAATCCGGGGAGGCGACATCCAGAACAGAAGGTGACAACATGATAGATGATGATGTAAAATCAGACTTGTAA 1185 0.4371 MDLVVPEEELSLDLRPSFVPKTITDLLCHLSTTPNASHKVSLLDDFVNRLELELAKIQAFKRELPLCMFLLNDAISALKVESAKCRACKSEPVLEEFIPLKKECDQREESEKEKECRDKKNWMSSFQLWNTDDKADNNNNAYECDKTQNYKVENMNNGQERQSVAKDLFQYGRNRNGERGFVMPFSSYPATKEEKEDCVVNGLSLQTPGTAVKSTREGSGCRTSSCRVVSSTPSPPHQPQNGRKQRRCWSPELHNRFVKALMELGGSQAATPRQIRELMRVDGLTNDEVKSHLQVSSYCSISPYCLLLLDLRLTYGCLLLQKYRLHPRRVPVATAANSNRSAVDLGGLWMHNKSLKGSSSGSPQGPLQLATQSGEATSRTEGDNMIDDDVKSDL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00204 394 MobiDBLite consensus disorder prediction 208 245 - -
Pumo8g00204 394 MobiDBLite consensus disorder prediction 354 394 - -
Pumo8g00204 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 295 IPR017930 -
Pumo8g00204 394 SUPERFAMILY Homeodomain-like 242 295 IPR009057 -
Pumo8g00204 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 22 383 IPR044787 GO:0003700|GO:0006355
Pumo8g00204 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 244 295 IPR006447 GO:0003677
Pumo8g00204 394 MobiDBLite consensus disorder prediction 208 246 - -
Pumo8g00204 394 Gene3D - 243 298 - -
Pumo8g00204 394 MobiDBLite consensus disorder prediction 354 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00204 Pumo-Chr8 6355997 6358966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00204 9 350 G2-like Transcription Factor Family AT2G03500 36.022 2.65e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo8g00204 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00204 - - gmx:100809323 635.95