Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00193 ATGATGGGGGAAGAGGCGAAAGAAGGAGAACAGGAGGGGAATGATCGACATAAGGGTTCAATAATCCATTTTCAACAAACAAACACCTATGCAAACATAGAGATTCCACCACCAATAAACTCAAATAACGGAGGCCCGGTTCCTAATTTGGTTGTGCGAGACAAAAGCAAGATGCCAATTACAAATGTGACAAAAATCATGAGTCAGATTCTTCCAAATAATGCGAAAATTTCATACGATGCCATGGAGATGATTCAACAAAGTGCTACAAAGTACATAAACTTTGTAACTAGAAAATCCAAGGAGCGATGCCAAAGTGAGTATAGAAAGGTTATGAATGCGGAGGACCTGTTATGGGCCATTGAGAAATTGGGCTTTGATAAATATGTTGAGCCTCTCACTACTTTCATCCAACGTTATCGTAACATTCAAGGAGGTGATCTCTTCGCTAGCCATGGGGAGCCCATTCCTCACGCTGAAAACAATGGGCCTAGTTTTGGACTTGGGCCTAACCCTATGCCCACTTTGGAGATGCTTCACTCTCCCCTACCACCACCGGTTCATTCTTCAGAGCCATACTTTTCCATCGACCCAAACACAAATATGGAAATGTTTGACCCAAATGACATCAATGAGTTCTACCAAAATGGATTTGGTGTTGGTTGTTCAAATGATGCTTTCAACAACTTTGATGTTTCTGCTCTCTTCAATCATGATCAACTGTGA 726 0.416 MMGEEAKEGEQEGNDRHKGSIIHFQQTNTYANIEIPPPINSNNGGPVPNLVVRDKSKMPITNVTKIMSQILPNNAKISYDAMEMIQQSATKYINFVTRKSKERCQSEYRKVMNAEDLLWAIEKLGFDKYVEPLTTFIQRYRNIQGGDLFASHGEPIPHAENNGPSFGLGPNPMPTLEMLHSPLPPPVHSSEPYFSIDPNTNMEMFDPNDINEFYQNGFGVGCSNDAFNNFDVSALFNHDQL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00193 241 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 53 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo8g00193 241 SUPERFAMILY Histone-fold 57 147 IPR009072 GO:0046982
Pumo8g00193 241 Gene3D Histone, subunit A 51 157 IPR009072 GO:0046982
Pumo8g00193 241 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Pumo8g00193 241 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Pumo8g00193 241 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Pumo8g00193 241 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 57 121 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00193 Pumo-Chr8 6203971 6205961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00193 40 170 CCAAT-HAP3 Transcription Factor Family AT1G21970 48.252 3.44e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo8g00193 CBFD_NFYB_HMF 1e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00193 K08065 - pda:103724115 130.568