Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00191 ATGCCTCGCCCTTGTTTCCACAAGCTTTTTCTCCCCACCACTCTCCAATCCAGACAACTGAGGATTCCGGATAATTTTCTGAGGAAATATGGGGCCCAGCTTTCTACAATTGCTACCCTCACTGTTCCTGACGGTAGTGTTTGGCGTATAGGATTGAAGAAAGCAGACAACAGAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTTCAACGCTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTCATTGTTCATATTTTTAATTTGAGTACCTCTGAGGTGAATTATCAATCGGCCATGAGAAACCATAATGAAGGGTCTTGCTTTGCCAATTATCATCATATTTTTGATGAAATGGAAGATGTAGACTCCCTTGATTTGTCGGATTTGTCACCTCCATACCTTACTTCTGGTGCATTGCAAAACAAGGGTTTTGCTGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTTTGCAGAATTTGTTCAATGGTGGATCAAAACTCAATCGTGTAAACTGGGGTGATGGTGGGAGTGCTTTTTCTTCGAAGGGTGCCAATTCACAAGGCAATCAGTCAACTAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACTGAAGAATTGAAATTGCGTTATTCTAATGAGGAATCGGTTAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGCCCTATGGCGAGGAACCTTCTGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACCGTGACAGCCGAAGAAAGAGAAAGGGCAATTAATGCTTCAAAAGCATTTGAACCAACTAATCCTTTCTGCCGAGTTGTCCTGCGACCCTCCTATTTGTATAGGGGATGCATAATGTATTTGCCTTCCTGCTTTGCAGAAAAGAATTTGAATGGGGTTTCGGGATTCATCAAACTTCAGTTGTCCAATGGAAGACAGTGGTCTGTTCGGTGCCTCTATAGGGGAGGTCGAGCTAAGTTAAGCCAAGGATGGTTTGAATTCACAGTGGAGAACAATTTGGGGGAAGGTGATGTCTGTGTGTTTGAGCTCCTTAGAATGAAGGAAGTTGTGCTGCAAGTTACGGTATTTCGCGTAACCGAGGATGCAGGGTTGTTGAACCTCCCTCACCCTCCTATGCTGCAGCAGAGCCCAAATATGAGCCACACTAAACTCTTGAACCCTCACTTGCAGCATCGCGTCAGTACAACCAAATTGATTAGAAATTAG 1308 0.4297 MPRPCFHKLFLPTTLQSRQLRIPDNFLRKYGAQLSTIATLTVPDGSVWRIGLKKADNRIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEVNYQSAMRNHNEGSCFANYHHIFDEMEDVDSLDLSDLSPPYLTSGALQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSAFSSKGANSQGNQSTRDIGVQFNAVEFKRSTEELKLRYSNEESVNKTAKKKRKSEPYGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDAGLLNLPHPPMLQQSPNMSHTKLLNPHLQHRVSTTKLIRN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00191 435 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Pumo8g00191 435 SMART B3_2 298 393 IPR003340 GO:0003677
Pumo8g00191 435 SMART B3_2 6 98 IPR003340 GO:0003677
Pumo8g00191 435 CDD B3_DNA 4 96 IPR003340 GO:0003677
Pumo8g00191 435 MobiDBLite consensus disorder prediction 228 259 - -
Pumo8g00191 435 PANTHER B3 DOMAIN-CONTAINING 3 385 - -
Pumo8g00191 435 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pumo8g00191 435 SUPERFAMILY DNA-binding pseudobarrel domain 291 392 IPR015300 -
Pumo8g00191 435 Gene3D - 1 99 IPR015300 -
Pumo8g00191 435 Pfam B3 DNA binding domain 10 96 IPR003340 GO:0003677
Pumo8g00191 435 Pfam B3 DNA binding domain 301 391 IPR003340 GO:0003677
Pumo8g00191 435 CDD B3_DNA 296 391 IPR003340 GO:0003677
Pumo8g00191 435 MobiDBLite consensus disorder prediction 228 250 - -
Pumo8g00191 435 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Pumo8g00191 435 Gene3D - 275 395 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00191 Pumo-Chr8 6106000 6113512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00191 1 397 B3 DNA Binding Superfamily AT3G18990 50.000 1.94e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo8g00191 B3 3.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00191 - - gmx:100806715 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00191 8 6106000 6113512 Pumo8g00191 8 6106000 6113512 ECH