Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00184 ATGACCGAGGGTCAGAGATCTAAGGGCACAGTGAAATGGTTCAATCAGGATAAAGGTTTTGGTTTCATAACTCCCGAAGATGGTGGCGATGATCTCTTTGTGCACTTCTCTTCGATCCAAACCGACGACGGCTTCCGCACCTTGTCGGAGGGTCAGTCAGTAGAGTTCCTCGTCACTTACAACGACGACGGGCGAGCCGCGGCCATCGACGTGACCACCACGGTTAAATCTAGCGACCGTGGTAGCGGGGAAAACTCTGGTGATGCTGCCAACGCTGAGAAATGA 285 0.5298 MTEGQRSKGTVKWFNQDKGFGFITPEDGGDDLFVHFSSIQTDDGFRTLSEGQSVEFLVTYNDDGRAAAIDVTTTVKSSDRGSGENSGDAANAEK 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00184 94 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Pumo8g00184 94 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Pumo8g00184 94 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Pumo8g00184 94 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 86 - -
Pumo8g00184 94 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Pumo8g00184 94 FunFam Cold shock protein CspC 6 74 - -
Pumo8g00184 94 CDD CSP_CDS 8 72 IPR002059 GO:0003676
Pumo8g00184 94 ProSiteProfiles Cold-shock (CSD) domain profile. 6 73 IPR002059 GO:0003676
Pumo8g00184 94 SUPERFAMILY Nucleic acid-binding proteins 3 73 IPR012340 -
Pumo8g00184 94 Gene3D - 1 72 IPR012340 -
Pumo8g00184 94 MobiDBLite consensus disorder prediction 74 94 - -
Pumo8g00184 94 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Pumo8g00184 94 SMART csp_8 8 74 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00184 Pumo-Chr8 6056095 6056974 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pumo8g00184 CSD 4.3e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00184 - K09250 gsj:114402365 152.91