Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00174 ATGCCTGAACCACATTCCCCCTCTTTCCTCCTCTGTCAAGAACACTACACTTTCCAACAAACCAATGGAGACACTCACTCAACTCTCACCAACACCCCATCTTCACCTTTGACTTTTCCCGACAACCACCACTTGCTTCTCTCTCTTCTCTCCAAAGAGAGCGCCACGCATTCCTCTCTCTCTCCTCACCACGACGTCGTACGTTGGATTTTTAGAGTTTCCGACCACTACGGTTTCACTCCTCTGACCACCGTTCTCGCCATTAACTACTTCGACAGGTTCGTTAAGAGCATAAGGTGTCAGATCGAAGAACCACCATGGATGACTCAGCTGGTTGCAGTTGCTTGCGTGTCTCTCGCTGCCAAAGTGGAGGAGACACAAGTGCCACTTCTTTTCGACTTGCAAGTACCTTCCAAATACGTGGGGGAAACGATATTCGTGTTTAAAGCACAGACCATACAGAGAATGGAGCTCCTAGTGTTGTCCACTCTCGAATGGAAAATGAACCCTGTCACCCCAATTTCTTTCTTTCAACACATTCTCACAAGGCTTGGTTTAAAGCGCCGCTTGCACTGGGAATTTCTGCGTAGGTGCCAACGTGTTCTTCTCTCTGTTATTGCGGATTCAAGGGAACAAGTGAATGGGTGCTACAAACTCATGCTGAGACTATTAGCTTGCTGTGAAGGCATTCGCAATCTTGGTCAGAGGCCCAAACGTTTATCTGAACCAAGTAGCCCAGATTATCCAGCAGTAGATCCTTTAGATTCAATCTCAACCATGCTCCCACCTCGGATTGTTGGTGAAGAACATTATGACATTGCACAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAAACATTATAGCTATCTTTGGCTTAGACGAATTATCCGAAGAAGATCGCTTAACCATAGTAAGAGCACAAAAAATTGAGCGTTTCTTATCACAATCTTTTTTCGCAGCAGAAGAATTGGTGAGTACATTTATTTCAAATTATTCATGGACAGTGGCATCACTTTCAGAGGAGCCAGTGTTTAAGGGGAGAAAAGCTCAGGACCAGCAGATGCGGTTGCCTTCAGTGAACAGAGTGGTTATTGATGTTCTAAATACTCCTCGTTAA 1128 0.4468 MPEPHSPSFLLCQEHYTFQQTNGDTHSTLTNTPSSPLTFPDNHHLLLSLLSKESATHSSLSPHHDVVRWIFRVSDHYGFTPLTTVLAINYFDRFVKSIRCQIEEPPWMTQLVAVACVSLAAKVEETQVPLLFDLQVPSKYVGETIFVFKAQTIQRMELLVLSTLEWKMNPVTPISFFQHILTRLGLKRRLHWEFLRRCQRVLLSVIADSREQVNGCYKLMLRLLACCEGIRNLGQRPKRLSEPSSPDYPAVDPLDSISTMLPPRIVGEEHYDIAQRVKQTLQRYKELQNIIAIFGLDELSEEDRLTIVRAQKIERFLSQSFFAAEELVSTFISNYSWTVASLSEEPVFKGRKAQDQQMRLPSVNRVVIDVLNTPR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00174 375 FunFam D6-type cyclin 47 169 - -
Pumo8g00174 375 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 261 327 - -
Pumo8g00174 375 Gene3D - 170 208 - -
Pumo8g00174 375 Pfam Cyclin, N-terminal domain 61 169 IPR006671 -
Pumo8g00174 375 SMART cyclin_7 68 162 IPR013763 -
Pumo8g00174 375 Gene3D - 64 169 - -
Pumo8g00174 375 ProSitePatterns ATP synthase alpha and beta subunits signature. 249 258 IPR020003 GO:0005524
Pumo8g00174 375 PANTHER ATP SYNTHASE 247 327 - -
Pumo8g00174 375 CDD CYCLIN_AtCycD-like_rpt1 65 166 - -
Pumo8g00174 375 Gene3D - 261 336 IPR024034 -
Pumo8g00174 375 SUPERFAMILY Cyclin-like 51 169 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00174 Pumo-Chr8 5856944 5865390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00174 46 210 Core Cell Cycle Gene Families AT4G34160 56.977 3.71e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00174 K14505 - gmx:100807175 314.694