Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00136 ATGGAAAAGGTGGCTCCGCCTCCGATTCTGATGCACCGCAAGCGCGATCTGTCGTACGGCGTCGTTTCGGCGGGTCCGAACGAGAGCTGGAAGTGGGAGTGGGACAGCGTGCGTTTCGCGGGGAAACCGCCACCGCTAACTCCCTCCCCAAACGACGACGTCGTTTTCGAGGAGGAGAGTCTCGTGCCGCCGCTTCAGTTAAACCTCTGCGGAAGAGCGAACAACAACGGCAACAGCAACAAGAGGGTGCGGTCGGGGTCACCCGGAACGGCGTCGTATCCGATGTGCCAGGTGGATAACTGCAGAGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGGCACAAGGTGTGCGAGGCTCACAGCAAAGCCTCCAAGGCGCTTCTCGCGAATCAAATGCAAAGGTTTTGTCAACAGTGTAGCAGGTTCCACCCGCTCTCGGAGTTCGACGAGGGGAAACGGAGCTGTCGCCGCAGACTCGCTGGACACAACCGCCGCAGGAGGAAGACGCAGCCGGAGGATGTTACTTCCGCGACACCCGCACCCGCCGTGGCCGCCAATTTGGAAATCTTCAACTTGTTGACTGCCATAGCTGGAGCTTCCCAGGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAGAGAGCAGCTTGTTCAGATTCTCAATAGGATACCTTTGCCTGCAGATCTTGCAACCAAGTTGCTGGATGCTGGTAGTGGTAATGTTAATGGGAAAAAAGATCATGTGCAATTGCAGACACCATCCTCCTATCAATGTCATGACCAACTGAATCACACCCCAGCTGCCCCATTAACTATGGACTTGCTTGGTGTTCTTTCCACCTCTCTTTCTGGGGGGTCTGCCCCTGATGCCAGCGCGTCGCCCTCTCAAAACCGCAGCTGCAGCAGTGATGGTGGCAGTGACAAGTCTAGGAATAGTGCTGACCAGACGAGACAACAGCATTTCTTTTCTGTTGGTGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTCGAAGATTCAGACTGCCAGGAGGATGTTCGAGTTAATTTACCACTTCAACTCTTTAGCTCCTCTCCAGAAGATGACAGCTTGCCTAAACTAGCATCTTCGAGAAAGTATTTCTCATCTGACAGTAGTAACCCTGCTGAAGATAGGTCACCATCGTCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGGGCTAGAGGTCTCAAGCCAGAGAGTATATCCTCTGGAAGAGGAGTTAATGCAAATAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTTGATCTATTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTCCCTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCCGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGAAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCCATTTTCCAGGAACACTGCGAGCACAGATTCACAATTGGCTATCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCTTATCAATTTATGCTTCAATGTCTTCTGCTGACTGGGAGAAACTAGAAGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAATTCAGATTCCCATTTTTGGAGAAATGGAAGGTTTCTGGTTCATTCTGGCAGTCAGTTAGCTTCACACAAAGATGGGAAGATACGCTTATGCAAACCATGGAGAACATGGAAGTTGCCAGAGTTGATTTCTGTGTCCCCTTTGGCAATTGTTAGTGGGCAGGAAACGTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGATTCACTGTACAGGTACTGGCTCTTACACATCGGCAGAAGTCATAGGATCTGCATATCCTGGTGTGATGTATGATAAGATAACATTGAGTGGTTTTAAAGTTCAGGATGTATCGCCTGGTGTTCTGGGTCGCTGTTTTATTGAGGTTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCAAGGAATTGAGACCACTTGAGTCTGAATTTGATGAGGAGGGAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGAAGGCCGAGATCAAGGGAGGAGGCTTTGCACTTTCTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCATATGTGCATGAGGTTCCATATTATTCACTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTGGATGTGCTGGTTGGTAAACACTTGCAAGGGGAATGGTTGTCAACAGGGTCAGTGGAGATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACATAGGCATGGTTGATTTGCTCATCCACTATTCAATTCCAAGCAAAAATGGTACATCCAGGAAATATGTATTTCCACCGAATCTTGAGGGTCCTGGTGGTATTACACCCTTGCACTTGGCAGCATGCACATCTGGTTCTGAGAGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGCTTGAAGTGCTGGGAATCCCTTGTGGATGCAAATGGGCAGACTCCGCACGCCTATGCCATGATGAGGAATAATGACTCTTATAATGTGCTGGTTGCCCGTAAACTTGCTGATAGACGAAGGGCTGAAATTTCGGTAACAATTGAGAATGGGATAGAACAACAGTCACTGAGAGTGGAGCTTAAGCAAAAACAAAGTAACCTAGTCAAACGCGGTCAGAGTTCTTGTGCCAAGTGTGCGAATGCAGAATTTCACTACAACAGAAGAGTTCCAGGTTCACACAGGATGCTTCATCGCCCCTTTATTTATTCAATGCTAGCTGTTGCAGCCGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGACGCCCTTTCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAAATCTGGATTATGGCACAATATAA 3048 0.4711 MEKVAPPPILMHRKRDLSYGVVSAGPNESWKWEWDSVRFAGKPPPLTPSPNDDVVFEEESLVPPLQLNLCGRANNNGNSNKRVRSGSPGTASYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAVAANLEIFNLLTAIAGASQGKFEERRSQVPDREQLVQILNRIPLPADLATKLLDAGSGNVNGKKDHVQLQTPSSYQCHDQLNHTPAAPLTMDLLGVLSTSLSGGSAPDASASPSQNRSCSSDGGSDKSRNSADQTRQQHFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEDRSPSSSPPVVEMQFDLQGGARGLKPESISSGRGVNANKEASQSHSCNISLDLFKGSNNRIQQPSSLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIHNWLSNRPSDMESYIRPGCVVLSIYASMSSADWEKLEENFLQHVHSLIQNSDSHFWRNGRFLVHSGSQLASHKDGKIRLCKPWRTWKLPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYTSAEVIGSAYPGVMYDKITLSGFKVQDVSPGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEGKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFAVERNCCMLVKTLLDVLVGKHLQGEWLSTGSVEMLNAIQLLNRAVKRKYIGMVDLLIHYSIPSKNGTSRKYVFPPNLEGPGGITPLHLAACTSGSESVVDSLTSDPQEIGLKCWESLVDANGQTPHAYAMMRNNDSYNVLVARKLADRRRAEISVTIENGIEQQSLRVELKQKQSNLVKRGQSSCAKCANAEFHYNRRVPGSHRMLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLDYGTI 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00136 1015 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 804 IPR044817 GO:0003677
Pumo8g00136 1015 MobiDBLite consensus disorder prediction 160 180 - -
Pumo8g00136 1015 MobiDBLite consensus disorder prediction 284 427 - -
Pumo8g00136 1015 MobiDBLite consensus disorder prediction 284 341 - -
Pumo8g00136 1015 FunFam Squamosa promoter-binding-like protein 14 87 157 - -
Pumo8g00136 1015 Gene3D - 86 157 IPR036893 GO:0003677|GO:0005634
Pumo8g00136 1015 SUPERFAMILY Ankyrin repeat 762 906 IPR036770 -
Pumo8g00136 1015 SUPERFAMILY SBT domain 94 174 IPR036893 GO:0003677|GO:0005634
Pumo8g00136 1015 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Pumo8g00136 1015 Gene3D - 757 947 IPR036770 -
Pumo8g00136 1015 Coils Coil 1012 1015 - -
Pumo8g00136 1015 MobiDBLite consensus disorder prediction 352 397 - -
Pumo8g00136 1015 MobiDBLite consensus disorder prediction 447 477 - -
Pumo8g00136 1015 Pfam SBP domain 96 169 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00136 Pumo-Chr8 3106465 3112693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00136 8 1015 SBP-box Gene Family AT1G20980 52.557 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo8g00136 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00136 - - gmx:100819004 1838.54