Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00130 ATGGCAGCACCTTTTTCTGCAGCATCTCTCTTTGCAGTCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACACCATCATCATCAACAACTCCAGCTGCACCACCACCCCAGAAGAAAAGAAGAAACCAACCTGGAACACCAAATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACTCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAAAAGACTAACAAAGAGCCAAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGATCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAAGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGAAGAGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCTTTGGCACAAGAGAGTGCAAGAGAGCCACCAAACCTGAGCAGTGCCATTGGCAACCAACTATATGGAAACAGTAACAACATGTCCTTAGGCTTATCTCAAATGGGTCCACAAATCCCTTCCCTCCATGACCAAAACCCCCAACCTAGTGACCTATTGCGTTTTGGTGGTGGTGCACCAAGGCCTGACCCTCTTCCTCATCACACTCACACCAAACCATGCAAACCCCTCCTCCATTCTTCATGCCATGAACCAAACCATAACTACCAAGGGCTAATTCAATTGTCTGACCTAAACAACAACAATGCCCCTTCTGGCTCCAACCTCTTCAACCTTCCCTTTCTATCCAACCGTTCCAACAGCAACTATTCTGATCAGGAACAACAATTCAACACTGCTGAAGGGTCCAATTTCTTCTCAGAAGGTACCATAAACATTGGCACTGATCACCAAACTAGCTCCACCACCACTGCCCCTTCTCTCTTCAGCACCTCGCTTCAAAACAACCCCAACATTTCTCACATGTCAGCCACTGCACTGCTTCAGAAAGCTGCTCAATTGGGATCTGCAAGTTCCAACAACAACAACAACAACAACAACAACAACACCAGTGCCTCCTCTCTTCTCAGAAGCTTAGCTTCCAAATCTGATCACAGGCCAAACTATGCAACCATCTTCAACAACAGCGTTCAAGAAATGATGAACATTCCAGTTCCAGGGTTTGAAGCATATGATCATCATGGCATGAACAAAGAACCGAAACTCAGTGGTGTTGGAGGCTCTGATAGGCTCACAAGGGACTTTCTAGGAGTTACACAGCAACAACAACAACAACGAGGGTTTAACTTTAGCTCTTTGGAAGCAGAGACAAATAATAATGCTGCGCCGTCAGGTCAATCTTTCGGAACTGGAGGGAACTTTCAGTGA 1515 0.4601 MAAPFSAASLFAVREEDQNQMKQQHSSTPSSSTTPAAPPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREPPNLSSAIGNQLYGNSNNMSLGLSQMGPQIPSLHDQNPQPSDLLRFGGGAPRPDPLPHHTHTKPCKPLLHSSCHEPNHNYQGLIQLSDLNNNNAPSGSNLFNLPFLSNRSNSNYSDQEQQFNTAEGSNFFSEGTINIGTDHQTSSTTTAPSLFSTSLQNNPNISHMSATALLQKAAQLGSASSNNNNNNNNNNTSASSLLRSLASKSDHRPNYATIFNNSVQEMMNIPVPGFEAYDHHGMNKEPKLSGVGGSDRLTRDFLGVTQQQQQQRGFNFSSLEAETNNNAAPSGQSFGTGGNFQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00130 504 MobiDBLite consensus disorder prediction 224 266 - -
Pumo8g00130 504 SMART c2h2final6 112 142 IPR013087 -
Pumo8g00130 504 SMART c2h2final6 71 93 IPR013087 -
Pumo8g00130 504 SMART c2h2final6 147 167 IPR013087 -
Pumo8g00130 504 FunFam protein indeterminate-domain 12-like 50 118 - -
Pumo8g00130 504 MobiDBLite consensus disorder prediction 224 244 - -
Pumo8g00130 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 478 IPR031140 -
Pumo8g00130 504 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Pumo8g00130 504 Gene3D Classic Zinc Finger 125 204 - -
Pumo8g00130 504 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Pumo8g00130 504 MobiDBLite consensus disorder prediction 485 504 - -
Pumo8g00130 504 Gene3D Classic Zinc Finger 50 119 - -
Pumo8g00130 504 MobiDBLite consensus disorder prediction 346 365 - -
Pumo8g00130 504 MobiDBLite consensus disorder prediction 1 55 - -
Pumo8g00130 504 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Pumo8g00130 504 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Pumo8g00130 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00130 Pumo-Chr8 3006306 3011727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00130 10 248 IDZ Gene Family AT2G02070 69.380 6.80e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g00130 zf-C2H2_jaz 3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00130 K25870 - gmx:100807789 770.77