Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00129 ATGGCTTCTGCTTCCTCATCCACACCCTTCTTGGGAATCAGACAAGAAAATCAAAGTCAGGTTACACAACAACACCACCAATCCTCCACAGCTGCTTCCTCAACTACCACTACTACTACTCCAACCACAGTGCCTCAAAAGAAAAGGAGGAATCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACTCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAAAAGACTAACAAAGAGCCAAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGATCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAAGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATAACTCATAGGGCCTTTTGTGATGCTCTAGCACATGAGAGTGCAAGACACCCTTCCAACCTGAATCATTTGGGAACTCATCTGTATGGCACAAACCACATGAGCCTAAACCTTGGTGCTCAACTTCAGAACCACCAAGCAGCCACTAACAGCATATTGAGCCTTGGAAGTGCACCAAAGTTTGAGCACTTAATCTCACCCAATCTGCACCACTCATCATCATTTGGAGTGCAATCACCACCACCATCCCAGTCACCATTCTTCATGGCTGACCCAAACCAAGCATTTCAAGACCTCCAATCTCAGCAACAAGGACACTTATTCTCAAACAAACAACTCCATGGTCTCATGCAATTCCCTGATCTTCAAGGAACCACCAATAATAACTCCACTTCTACTTCATCAGTATCTGCTTCAGCAAATAACACCAATCTCTTCAACCTCAGCTTCTTTCCTAACACCAACACCAGTGCCAGCATAATCAATGATCAATTCAGCAACATGAGTGGAGGTAATAACCACCAAGGAACAGCAACACTCTACAATACTAATAGCCCTGTGAGTAACCATAACCAAGTTGGTTCAGGCTTGTCTTCACTCTTTGGAAACTCATCAGTGCAACAAGACAACATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCACAAATGGGTTCAACCACAACCACCAATGGTTCCCCCTCTCTACTAAGAGGAGCAGAAGAGTTAGGCATGAGATCAAACATGGAGAATATTAATGAGCACACTAACCATCTACGTGGGTTGATGAACTCTCTTGCCAATGGAAACGCTTCCATGTTTGGCAATAATGTGAAAGGAAACGAAAACAACCTTGGTCATCAGTTTCACAACGTGGTGGAGGAGCCTAAGAAGTTGTCACAAAACCTTGGTTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGTGTTGGAGGAATGGTGAGGAACATGAACAATGGTGGGTTTTCACAAAGAGAGCAACAACAACACTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACAAGCAAACCAACACTATGGAACCTCAACACTCTAA 1689 0.4482 MASASSSTPFLGIRQENQSQVTQQHHQSSTAASSTTTTTTPTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNHLGTHLYGTNHMSLNLGAQLQNHQAATNSILSLGSAPKFEHLISPNLHHSSSFGVQSPPPSQSPFFMADPNQAFQDLQSQQQGHLFSNKQLHGLMQFPDLQGTTNNNSTSTSSVSASANNTNLFNLSFFPNTNTSASIINDQFSNMSGGNNHQGTATLYNTNSPVSNHNQVGSGLSSLFGNSSVQQDNMSPHMSATALLQKAAQMGSTTTTNGSPSLLRGAEELGMRSNMENINEHTNHLRGLMNSLANGNASMFGNNVKGNENNLGHQFHNVVEEPKKLSQNLGLCFGGSDKLTLDFLGVGGMVRNMNNGGFSQREQQQHSMGTMSPLDPKLESAQANQHYGTSTL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00129 562 FunFam protein indeterminate-domain 12-like 55 123 - -
Pumo8g00129 562 MobiDBLite consensus disorder prediction 1 59 - -
Pumo8g00129 562 Gene3D Classic Zinc Finger 59 124 - -
Pumo8g00129 562 SMART c2h2final6 117 147 IPR013087 -
Pumo8g00129 562 SMART c2h2final6 76 98 IPR013087 -
Pumo8g00129 562 SMART c2h2final6 152 172 IPR013087 -
Pumo8g00129 562 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Pumo8g00129 562 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Pumo8g00129 562 Gene3D Classic Zinc Finger 130 210 - -
Pumo8g00129 562 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 531 IPR031140 -
Pumo8g00129 562 MobiDBLite consensus disorder prediction 524 562 - -
Pumo8g00129 562 Pfam Zinc-finger double-stranded RNA-binding 76 98 IPR022755 -
Pumo8g00129 562 MobiDBLite consensus disorder prediction 1 50 - -
Pumo8g00129 562 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Pumo8g00129 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00129 Pumo-Chr8 2982960 2988242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00129 10 528 IDZ Gene Family AT2G02070 46.007 1.49e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g00129 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00129 K25870 - gmx:100806198 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00129 8 2982960 2988242 Pumo8g00129 8 2982960 2988242 ECH