Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00128 ATGGGAAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACTATTATATTCTATACATTGATTCTTGTCATGCTTGTGTTTATCCTGTTTACTACATACATACATTGGTCCAACAGGACAAGACTTCAACCAGAGAGCTACATATCAGTCTCTGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTTTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGTCATAACAAAGGGCCTGGAGCTACTGAAGATTGGAGCCTGTTAGGAAAGAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACTTCGAAGGGTAAATACTTCAACAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGAGAGGACATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAATTTCTATTGGGATACTTGATGTGGCTCTTAAACAGATGGTGTGA 693 0.3882 MGRIKPQALLQQSKRKKGPSRISATTIIFYTLILVMLVFILFTTYIHWSNRTRLQPESYISVSEDENTSVESKKSDLPGYAVLITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHNKGPGATEDWSLLGKKYASMRHEAFMLGTSKGKYFNKGFDLFITTAPIPDLNEKLIVFGRVIKGEDIVQEIEEVDTDEHYQPKISIGILDVALKQMV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00128 230 Gene3D - 64 229 IPR029000 -
Pumo8g00128 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 224 IPR002130 GO:0000413|GO:0003755
Pumo8g00128 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Pumo8g00128 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Pumo8g00128 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Pumo8g00128 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Pumo8g00128 230 SUPERFAMILY Cyclophilin-like 77 225 IPR029000 -
Pumo8g00128 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 226 IPR002130 GO:0000413|GO:0003755
Pumo8g00128 230 CDD cyclophilin 82 223 - -
Pumo8g00128 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00128 Pumo-Chr8 2937259 2942821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00128 79 226 U-box Gene Family AT5G67530 28.387 4.49e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00128 - - gmx:100796043 440.654