Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00126 ATGAATTCTCTCTTCTCACCGGAAAACCTTCCCCCACCGCCGGGAATCCCAATCCCCGCCACAATCGCCGCCGCCACCACCACCACCACCACAACCCCAATTCTAACCCCAAAGCTCGAACCTTTCGACGAATGGCTCAACACCCACACACCCCAACAACAACAACAATCTCAGGACCCCAATTTTTCAAACGGGTCCCTCGACCTCGACCTGAACCTCTTCTGCGACGAAACCCCCGACGCTGTCTCCGGCGACCCCAACCTGCTCTCCGAGTTCCACCGTCTCTCTCAGCTTTTCAGAACCGCTTTCTCCCACAACGACGCCGTTCCCGACCCCATCACAAAAGGCCTCCAGCAGCTCCGAAACGACGCCGTTTCCAACCCCTTCGCCAAAAGCCCCCAAAACGGCACCGCCACCGTTCCGCCGCAGAACTTCCAAAACGGCGCCGTTTCGGACCCGGATTCCCGGGCAATTGTGCCGGTCCCGGAGGAGGGGCGGTCCCCCTCGGTGGCGGTGGCTACCACGCCGCGGCGGCGGTGCAAGGAGCTGGTCCGCGTGACGGATCTTGGCGAGCCGGAGCAGCGGCACTTCCGGGACATGGTCCGCCGCACGCGGATGGTGTATGACTCCCTGCGCGTCCTGGCAACGGTGGAGGACGAGCGGCGGGTGGACGCCCGCCGGGGCCGCAGCGATTTGCGCGCCTCGGCGGTGATGAGGAACTGCGGCCTGTGGCTGAACCGTGACAAGAGAATTGTTGGTGCAATTCCCGGTGTCTGCATTGGTGATGTGTTCCTTTACAGAATGGAGCTGTGTGTTGTTGGCCTTCACGGTCAGCCTCAGGCAGGGATTGATTATCTCCCTGCCAGCATGAGTTCCAATGGTGAACCAATTGCCACTAGTGTCATTGTCTCTGGTGGGTATGAGGATGATGTGGATGAGGGTGATGTTATCATTTACTCTGGCCATGGTGGCCAGGACAAGCACTCTAGGCAGGTTTTCCACCAGAAGCTTGAGGGGGGGAACCTTGCAATGGAGAGGAGTATGCACTATGGGATTGAGGTGAGGGTCATTCGCGGGGTGCGCTATGAGGGCGCAGCCTCTGCTACTGGGAAGTTGTATGTGTATGATGGGTTGTATAGGATTAATGAGTGCTGGTTTGATGTGGGGAAGTCGGGTTTCGGGGTTTATAAGTATAAGCTGTGTAGGATTGATGGGCAGGCTAAGATGGGGACTGTGGTGATGAAGGAGGCGCTTATGCTTAGGAGGGATCCCTTGAGTTTCAAACCCATGTGCTGTTTGGCGCTTGATATTTCGAATAGGAAGGAGAATGTGGTGGTTCGGCTTTTCAACGACATTGATCGTAACTATGACCCTATGCAGTATGAGTATCTTGTGAAGACGAATTTTCCACAGTTTGTGTTTCATCAGAGCGGGAGGGGGACCGGTTGTGAGTGCGTGGACGGGTGTGTTGAGGGGTGCTTTTGTGCTATGAAGAATGGAGGGGAGTTTCCTTATAATCAGAGTGGGATTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGTGGCCCGTTTTGTCGTTGTCCTCCTCATTGTCGGAACCGTGTCACGCAGAAGGGGTTGAAAAATAGGTTGGAAGTGTTTAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGTGCTTTTATATGTGAGTACACGGGGGTTGTTCTGACTAGGGAGCAAGCTCAGCTTTTGACAATGAACGGTGATTCGTTGATATATCCGAATCGGTTTACTGATAGGTGGGCAGAATGGGGGGACTTATCTATGATAGACTCCAATTATGTGCGTCCATCGTATCCGTCCATACCTCCTTTGGATTTTGCTATGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCGACTCCCAATGTGTTGGTTCAGTTTGTTCTGTATGATCACAATAATTTGATGTTCCCTCGCCTTATGCTATTTGCAATGGAGAACATCCCTCCGATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGAAAGCTCTCTATATGTAACTGA 2097 0.5327 MNSLFSPENLPPPPGIPIPATIAAATTTTTTTPILTPKLEPFDEWLNTHTPQQQQQSQDPNFSNGSLDLDLNLFCDETPDAVSGDPNLLSEFHRLSQLFRTAFSHNDAVPDPITKGLQQLRNDAVSNPFAKSPQNGTATVPPQNFQNGAVSDPDSRAIVPVPEEGRSPSVAVATTPRRRCKELVRVTDLGEPEQRHFRDMVRRTRMVYDSLRVLATVEDERRVDARRGRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGAASATGKLYVYDGLYRINECWFDVGKSGFGVYKYKLCRIDGQAKMGTVVMKEALMLRRDPLSFKPMCCLALDISNRKENVVVRLFNDIDRNYDPMQYEYLVKTNFPQFVFHQSGRGTGCECVDGCVEGCFCAMKNGGEFPYNQSGILLRGKPLVFECGPFCRCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQLLTMNGDSLIYPNRFTDRWAEWGDLSMIDSNYVRPSYPSIPPLDFAMDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPRLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00126 698 SUPERFAMILY PUA domain-like 234 416 IPR015947 -
Pumo8g00126 698 MobiDBLite consensus disorder prediction 126 152 - -
Pumo8g00126 698 ProSiteProfiles Pre-SET domain profile. 481 539 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g00126 698 SMART set_7 542 691 IPR001214 GO:0005515
Pumo8g00126 698 Pfam Pre-SET motif 437 534 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g00126 698 Gene3D SET domain 411 698 IPR046341 -
Pumo8g00126 698 Gene3D - 250 410 IPR036987 -
Pumo8g00126 698 Pfam SAD/SRA domain 252 406 IPR003105 -
Pumo8g00126 698 SUPERFAMILY SET domain 426 697 IPR046341 -
Pumo8g00126 698 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 161 686 - -
Pumo8g00126 698 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 94 698 IPR025794 GO:0016571
Pumo8g00126 698 MobiDBLite consensus disorder prediction 126 151 - -
Pumo8g00126 698 SMART preset_2 434 526 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g00126 698 ProSiteProfiles YDG domain profile. 253 402 IPR003105 -
Pumo8g00126 698 ProSiteProfiles SET domain profile. 542 685 IPR001214 GO:0005515
Pumo8g00126 698 SMART G9a_1 248 406 IPR003105 -
Pumo8g00126 698 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 235 418 - -
Pumo8g00126 698 Pfam SET domain 553 685 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00126 Pumo-Chr8 2869002 2878800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00126 198 687 Su(var)3-9 homologs AT5G04940 38.400 7.85e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo8g00126 SAD_SRA 9.2e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00126 K11420 - gmx:100795514 1264.21