Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00089 ATGGGCAATAAATCAGATCCCAAAGCCGGTGCTACTGCTACTGCTGTGCCACCTCCCCGAATTGGGAAGAGAGAGGGTGAGAATGAAGATGAGCAGCAAGTCAATGCAAAGAAGCAGAAGAGAGATGAGGCTGTTGAGGAGCAAAGGAATAAGGATGAAATTGTTTCAGGTGATTCCTTTGCAGATTTTGAACCAGATAAGAATCCTGAAGCTAAAAAAGACTCTCTAAGTAAACAGGAGAAGAAAGGCAAACCTGCTAGTGCTAACTGTTCCAGTTCTTCGGAGTCATTGGCTGATGGTTCTGAGGAGGAAGAAGGGAATATGGATATTGATGAGGGTGATAATTCTGAAGAAAATAATGAAGAAACACAAGAGAAGATGGAAGTATTGACTGTAAAAAGTTCAGAGAACAGTGAGGAAGGAATTGAGGAAAAAGACTCTAAAACTCCTCAAGAAAATCCTAAAATGTTATCTACACCAAATGAACAAAATGCTGGATCGAAGACAATAGTTACCAGAAACTTGTCATACAGTGTGGAACGAGCTGATTTGGAAAATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATCGTGACGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTCAGTTAAATTATACAGAATTGTTAAGATGTCGCATCAGAGTTGGTATAGCTCGACAAAAGCATAAGCATACCCCCAATAGAAGGAGTGAAGGAACTCAGCCTGTGAAAGGATCAGAGATTTCAGGGGACTGTGAACAAGAAACTGAGCCAAAAATAATTGCTACTTGCAAAGAACAAAGTGCTACATCAAAGACAATATATGCTAAAAACTTGTCATACAGTATGGAGCAGGATGATATGGAATTTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGCCTACATACAGATCATAAAGGGTGGTTTAAAGGCTATGGACATGTTGAGTTTGCAACCACAGAAGCTGCACAAAAAGCTCTTGAATTGAATAATACAGTATATTTGGGACGTCGCATTGGAGTTTTTATAGCTCAAGAAAAGGGTGAATATACCTCCAATAGAAGCAACTGGAGCAAGTCATTCCACCAGAGTGAAAGAGCTAAACCCATCAAAAGTACAGAGAGTTCAGAGTACTGTGAGGAAGAGGTTGAGGGAAAAGCCTCCAAAAGTCCTTGGGAAAGTTCTAAAAGGCTAGCTACTCTGAAAGAACCAAATGCTCCATCAAAGACAATATATGTTAGAAACTTGTCATACAGAGTGGAACGGGCTGATATGGAAATTTTTTTCAAAGAATGTGGAAAAATTGTTGATGTTCGTCTTCATACGGATCACACTGGGAGGTTAAACGGCTTTGGACAAGTTGAGTTTGCTACAGCAGAAGCTGCAAATAAAGCTCTTGACTTGCATGATACAGAATTGTTGAGACGTCCCATAGGAGTTTATTTGTTTCAAGAAAAAGGTGAATATACCTACTGTAGAAGCAACTGGAGCAACTCATTCCAGAAGGGTGAAAGAAATCAGTCTCCTCCAACTGTATTTGTGACGGGTTTTGATAGTTCCCTTCCGGCAGAAAAGATAAAAGCTAGCCTAGAAGAACATTTTGGTTCTTGTGGAGAAATTTGGAGGATATCAATTCCGAAATTTCATGATTCTGGTGCTGTTAAAGGGTTTGCTCACTTGGAGTTCAAGGATGTTGTCAGTGTGAGGAAAGCTCTACATCTTGATCAAAGTGAGTTAGGAGGTTTCACCTTGAGAGTTGAAAAAGCAAAGCCTCGACGTGATAACCAGGGTACAGGTGGTGACAGAGGTGGTGGTGGTCATCTGTTTGGTGGAAGGGATGGAAGTGGCTATAGCAGCAGAGTGGGTTGGGGGAGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATTTTTCTGATGAAGGCACAGAGAGGAAGACCCACTCTTACTGA 2004 0.4117 MGNKSDPKAGATATAVPPPRIGKREGENEDEQQVNAKKQKRDEAVEEQRNKDEIVSGDSFADFEPDKNPEAKKDSLSKQEKKGKPASANCSSSSESLADGSEEEEGNMDIDEGDNSEENNEETQEKMEVLTVKSSENSEEGIEEKDSKTPQENPKMLSTPNEQNAGSKTIVTRNLSYSVERADLENLFKECGEIVDVRLHTDRDGRFRGFGHVEFATAEAAQKALQLNYTELLRCRIRVGIARQKHKHTPNRRSEGTQPVKGSEISGDCEQETEPKIIATCKEQSATSKTIYAKNLSYSMEQDDMEFLFKECGEIVDIRLHTDHKGWFKGYGHVEFATTEAAQKALELNNTVYLGRRIGVFIAQEKGEYTSNRSNWSKSFHQSERAKPIKSTESSEYCEEEVEGKASKSPWESSKRLATLKEPNAPSKTIYVRNLSYRVERADMEIFFKECGKIVDVRLHTDHTGRLNGFGQVEFATAEAANKALDLHDTELLRRPIGVYLFQEKGEYTYCRSNWSNSFQKGERNQSPPTVFVTGFDSSLPAEKIKASLEEHFGSCGEIWRISIPKFHDSGAVKGFAHLEFKDVVSVRKALHLDQSELGGFTLRVEKAKPRRDNQGTGGDRGGGGHLFGGRDGSGYSSRVGWGRSGGGGWHSLHFSDEGTERKTHSY 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00089 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Pumo8g00089 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 244 IPR000504 GO:0003723
Pumo8g00089 667 SUPERFAMILY RNA-binding domain, RBD 284 374 IPR035979 GO:0003676
Pumo8g00089 667 MobiDBLite consensus disorder prediction 22 81 - -
Pumo8g00089 667 Gene3D - 510 649 IPR012677 -
Pumo8g00089 667 MobiDBLite consensus disorder prediction 98 119 - -
Pumo8g00089 667 Gene3D - 375 509 IPR012677 -
Pumo8g00089 667 Gene3D - 94 251 IPR012677 -
Pumo8g00089 667 Gene3D - 252 374 IPR012677 -
Pumo8g00089 667 SMART rrm1_1 169 240 IPR000504 GO:0003723
Pumo8g00089 667 SMART rrm1_1 290 361 IPR000504 GO:0003723
Pumo8g00089 667 SMART rrm1_1 530 606 IPR000504 GO:0003723
Pumo8g00089 667 SMART rrm1_1 429 500 IPR000504 GO:0003723
Pumo8g00089 667 MobiDBLite consensus disorder prediction 372 395 - -
Pumo8g00089 667 FunFam - 372 514 - -
Pumo8g00089 667 MobiDBLite consensus disorder prediction 82 97 - -
Pumo8g00089 667 Coils Coil 113 133 - -
Pumo8g00089 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 529 610 IPR000504 GO:0003723
Pumo8g00089 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 238 IPR000504 GO:0003723
Pumo8g00089 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 540 604 IPR000504 GO:0003723
Pumo8g00089 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Pumo8g00089 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 430 497 IPR000504 GO:0003723
Pumo8g00089 667 SUPERFAMILY RNA-binding domain, RBD 517 636 IPR035979 GO:0003676
Pumo8g00089 667 MobiDBLite consensus disorder prediction 244 269 - -
Pumo8g00089 667 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 275 383 - -
Pumo8g00089 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 428 504 IPR000504 GO:0003723
Pumo8g00089 667 MobiDBLite consensus disorder prediction 1 169 - -
Pumo8g00089 667 FunFam Nucleolin 2 515 652 - -
Pumo8g00089 667 SUPERFAMILY RNA-binding domain, RBD 421 524 IPR035979 GO:0003676
Pumo8g00089 667 MobiDBLite consensus disorder prediction 120 151 - -
Pumo8g00089 667 SUPERFAMILY RNA-binding domain, RBD 159 255 IPR035979 GO:0003676
Pumo8g00089 667 Coils Coil 27 47 - -
Pumo8g00089 667 MobiDBLite consensus disorder prediction 152 169 - -
Pumo8g00089 667 MobiDBLite consensus disorder prediction 607 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00089 Pumo-Chr8 2234998 2256971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00089 430 611 Eukaryotic Initiation Factors Gene Family AT2G36660 24.457 2.76e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00089 - - gmx:102664796 1057.36