Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00088 ATGAGTTCCAATTCCAAACAGAATCAACTTCCTACAGAGGTAGCAAAGGCCAATGATGCTTACCTCTCTGCTGTGTTACTTTCTTTTAGCCGGGTTTTCCCAGCAATCCTAAATGCTGCTATTGATCTCAATTTGTTTGATATCATAGCTAAGGCACAAAGTTCATGTAATTCAAGTTTATCTGCCTCTGAAATTGCTTCTTTGTTTCCAAATCAACACCCACAATTGGCTAATAGGCTTGAACGCATATTACCATTGTTGGCCAGTTATTCTCTTCTAAATTGCACCATTCGCACAAATGAAGATGGTAAGAGAGAAAGAGTTTATGCTCTCTCACCCGTTGGTCAATACTTTGCATTTGATAGTGAAGGAAACTCTTTGGCTCCTCTTTCAACTTTAGTACATAGTGGATATCATGACCTTTGGAAGGACGTGAAGGATGCAATTGTGGACCCTAATTGCAATAACTATTTTGAAAATGTCTATGGAATGCCGTCATTTCAATATATGGAGAGAAATTCAGAGCTGAATCAGATTTTTTACAAAGCAATGGCTCACTCTGCCCCATTGGAACTGAAAACGGTTCTCAAATCATATAAAGGATTTGAGAGTGTGTCAACACTGGTTGATGTAGGAGGTGGAGTAGGAGATACCTTGAAACAAATTGTCTCTGCATACCCTTCAATTAAAGGAATTAATTTTGATTTGCCTCAGATGATTCAAAATGCACCACATTCAGGTATACAGCATGTTGGAGGAGATATGTTTGAAAGTGTTCCAACTGGTGATGCCATTTTACTAAAGTTTGTATGTCATAATTGGCCAGATGAAGACTGTATAAAGTTTTTAAGAAATTGTCATACTGCTTTGCCACAACATGGAAAAGTGATTGTTTTGGACTATATCATTCCAGAGGTCCCAAATTCAAGTGATATATCTAAGCATACTAGTGCTATCAACAATCTCATGTTTTTAGCTCATGGTGGAAAGGAAAGAACTGAGATTGAATTTGAGAACTTGTGCAAGAGCTCTGGTTTTTCCAAGTTTCATGTTGCAAGTAGTGACATCTCAGCTACGCTAGGAGTGATAGAATTCTATAAATAG 1104 0.3768 MSSNSKQNQLPTEVAKANDAYLSAVLLSFSRVFPAILNAAIDLNLFDIIAKAQSSCNSSLSASEIASLFPNQHPQLANRLERILPLLASYSLLNCTIRTNEDGKRERVYALSPVGQYFAFDSEGNSLAPLSTLVHSGYHDLWKDVKDAIVDPNCNNYFENVYGMPSFQYMERNSELNQIFYKAMAHSAPLELKTVLKSYKGFESVSTLVDVGGGVGDTLKQIVSAYPSIKGINFDLPQMIQNAPHSGIQHVGGDMFESVPTGDAILLKFVCHNWPDEDCIKFLRNCHTALPQHGKVIVLDYIIPEVPNSSDISKHTSAINNLMFLAHGGKERTEIEFENLCKSSGFSKFHVASSDISATLGVIEFYK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00088 367 Gene3D - 2 118 IPR036388 -
Pumo8g00088 367 FunFam Caffeic acid 3-O-methyltransferase 2 118 - -
Pumo8g00088 367 Gene3D Vaccinia Virus protein VP39 121 367 IPR029063 -
Pumo8g00088 367 FunFam Uncharacterized protein 119 367 - -
Pumo8g00088 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 367 IPR016461 GO:0008168
Pumo8g00088 367 SUPERFAMILY "Winged helix" DNA-binding domain 19 121 IPR036390 -
Pumo8g00088 367 PANTHER O-METHYLTRANSFERASE 27 355 IPR016461 GO:0008168
Pumo8g00088 367 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Pumo8g00088 367 PIRSF O-mtase 1 367 IPR016461 GO:0008168
Pumo8g00088 367 Pfam O-methyltransferase domain 142 347 IPR001077 GO:0008171
Pumo8g00088 367 CDD AdoMet_MTases 207 303 - -
Pumo8g00088 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 354 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00088 Pumo-Chr8 2178254 2180190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00088 1 367 Monolignol Biosynthesis Gene Families AT5G54160 44.149 8.15e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00088 - - gmx:106794104 578.17