LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g00080	ATGTTATTGCATCCAAACTTGTGGCAGCTAAGCAAGCTGGATATTTTACTGAACCTACTAATCTCTCCACTTCAAATTGTGATGCACTTTTTTCATCTTTTTTCTGATGAATTCTTCTCCAATGACTTTCACTATGCACACGAAGAAATTGAAGTTTTGCGTTCTCTCCCTATATATAAAACAGTTGTTGGTTCTTATACTAAGTTGCAAGGTCAAGATCAGTGTATGATCCCTTCAAATTCATTTTTAAAACCATATGATGAGCGTTGCCTTTCTTATGCCACTGATTCAAATGAAAGTTCATTTCTTCGAGCCCTTGGAGTGCTGGAGTTGCATGATCAACAGATCTTAGTACGCTTTGGCTTGCCTGGCTTCGAGGGGAAACCTCAGAATGAGCAGGAGGAAATATTAATATATGTTTTCAAAAATTGGCATGATCTTCAGTCAGATCAATCTGTGGTTGAAGCTTTGAAAGAGACTAAATTTGTCAGAAATTCTGATGAGTTTTCAACAGATCTGTTGAAGCCCATGGATTTATTTGATCCTGGTGATGCTATATTAATATCTATATTCTTTGGTGAGAGAAGAAAATTTCCTGGAGAAAGGTTCAGTACAGATGGGTGGCTTCGAATACTAAGGAAACTTGGGCTTCGAACTGCTACTGAAGTAGAGGTAATAATTGAATGTGCCAAAAGAGTTGAGTTTCTTGGAATTGAGTGCATGAAATCAGGTGATTTGGATGATTTTGAGGCAGAAACAATCAACACTCGTTCTGAAGTTTTGCCAGAAGTGTGGGCATTAGGAGGATCTGTTGTTGAGTTTGTTTTCTCCAACTTTGCTCTTTTCTTTAGCAACAACTTCTGTGATCTTCTTGGCAAGATTGCATGTGTACCTGCTGAACTGGGGTTTCCTAGTGTTGGTTGCAAGAGGGTGCTTGCTTCATATAATGAAGCTATTTTGTCTAAAGATTGGCCTCTAGCTTGGAGTTGTGCTCCCATTCTATCCAAACAACACACTGTTCCTCCAGAGTATTCATGGGGACCTCTGCATCTACGGAGTCCTCCTCCTTATTGTACAGTTTTGAAGCACTTGCAAGTAATCGGGAGAAATGGAGGGGAAGATACTCTTGCTCATTGGCCCATTGCTTCAGGAATGAACATTGAGGAATGTACCTGCGAGATTTTGAAATATTTAGACAAAATTTGGGGTTCACTTTCTTCCTCAGATGTGGCAGAGCTATGCAAAGTGGCCTTTCTGCCTGTTGCAAATGGAACACGCCTTGTGACTGCCGATGCTCTATTTGCTCGTTTGATGATTAATTTGTCTCCATTTGCTTTTGAACTTCCTACTGTATATCTCCCATTCGTAAAGATTCTTAAAGATTTGGGACTTCAGGACATGCTAACACTTTCTGCTGCAAAGGGTCTTCTATTAAATCTTCAGAAAGCTTGTGGATATCAGCGACTAAATCCCAATGAGCTCCGTGCAGTGATGGAAATTTTGAATTTCATTTGTGATCAGATTGTCGAGGGGAACACATTAGATGGGTCAAACTGGAAATCAGAAGCCATAGTTCCTGATGATGGATGCAGACTTGTTCATTCAGCATCCTGTGTGTATGTTGATTCTTATGGTTCTCGATATGTCAAATGTATTGATACTTCCAGAATTAGATTTGTCCATGCAGATCTTCCTGAGAGAGTCTGTATTGTGCTCGGCATAAAAAAATTGTCTGACGTTGTCATAGAGGAACTGGATGACAATCACACACTACAGACTTTAGGTTCTCTGGGGTCTGTTTTACTAGTGACCATCAAACAGAAGTTATCAAGCAAGTCTCTTCAAAGTGCTGTCTGGACTATTGTTAATAGCATGGGCAGCTACATTCCTGCATTCAATAGCTTTTCATTGGATACAATAGAATGCTTATTGAACTCTACTGCAGAAAAGCTGCAATTTGTTAAGTGTCTTAAAACAAAATTTCTGCTCTTGCCCAATTTAGTAGATGTTACACGTACAGGCAAAGATTTCACCATCCCAGAGTGGAAGAATGATTCTGCACATCAAACGCTTTATTTTATGAACCAATCAAGATCCTGTATTCTAGTTGCTGAGCCACCAACTTATATTTCCCTTTTTGATCTCATTGCTATTATAGTCAGCCAGGTATTAGGCTCTCCTATCATATTGCCTATTGGGTCCTTATTTGGTTGTCCTGAAGGATCTGAGATTGCAGTTGTTAATGTTTTAAAACTTTGCTCTGATAAGAAAGAAGTTGAACCCGTAAATGGGAGCAGCAATATGGTTGGCAAGGAAATATTGCCACAAGATGCACGTCTTGTGCAGTTCCATCCATTGAGGCCCTTTTATTCTGGTGAAATAGTGGCTTGGCGGTCTCAAAATGGTGAAAAACTGAAATATGGTAAGGTTTCTGAAGATGTAAGACCAACTGCAGGTCAAGCTTTGTACAGACTTAAAATTGAAGTTGCACCGGGGGATACACAAATTTTCCTTTCATCACATGTATTTTCATTTAAAAGTGTATCAGCAAGCAGTCCCCTAAAAGAATCATTGGTGGATGGTAGCCCTGTATTAGGCAATAACAGGCCCCATGTTGATTTCCCAGAGAGCTCAGGAAGGGGAGAAAGCTACACTCAGGTGCAGCCTGTGAGAGAGCAGTCTGGCAAAGTTTCTGCTGCAGAACTGGTGCAGGCTGTCAATGAAATACTCTCTGCTGCTGGGATCAAAATGGACGTGGAGAAGCAGGCTCTACTTCAAAGAACGTTAAATTTGCAAGAAAATCTGAAAGAGTCTCAGGCAGCTCTTTTGTTGGAGCAGGAAAAGGTTGAAAAGGCAACAAAAGAGGCTGATACAGCAAAAGCAGCATGGATTTGTCGGGTTTGTCTGAGTTCTGAGGTTGATATAACAATAGTTCCTTGTGGTCATGTATTGTGTCGTAGATGTTCTTCTGCAGTGTCAAGGTGTCCCTTTTGTCGGCTTCAGGTTACAAAAGCTATCAGAATTTTTCGTCCATAA	3036	0.4035	MLLHPNLWQLSKLDILLNLLISPLQIVMHFFHLFSDEFFSNDFHYAHEEIEVLRSLPIYKTVVGSYTKLQGQDQCMIPSNSFLKPYDERCLSYATDSNESSFLRALGVLELHDQQILVRFGLPGFEGKPQNEQEEILIYVFKNWHDLQSDQSVVEALKETKFVRNSDEFSTDLLKPMDLFDPGDAILISIFFGERRKFPGERFSTDGWLRILRKLGLRTATEVEVIIECAKRVEFLGIECMKSGDLDDFEAETINTRSEVLPEVWALGGSVVEFVFSNFALFFSNNFCDLLGKIACVPAELGFPSVGCKRVLASYNEAILSKDWPLAWSCAPILSKQHTVPPEYSWGPLHLRSPPPYCTVLKHLQVIGRNGGEDTLAHWPIASGMNIEECTCEILKYLDKIWGSLSSSDVAELCKVAFLPVANGTRLVTADALFARLMINLSPFAFELPTVYLPFVKILKDLGLQDMLTLSAAKGLLLNLQKACGYQRLNPNELRAVMEILNFICDQIVEGNTLDGSNWKSEAIVPDDGCRLVHSASCVYVDSYGSRYVKCIDTSRIRFVHADLPERVCIVLGIKKLSDVVIEELDDNHTLQTLGSLGSVLLVTIKQKLSSKSLQSAVWTIVNSMGSYIPAFNSFSLDTIECLLNSTAEKLQFVKCLKTKFLLLPNLVDVTRTGKDFTIPEWKNDSAHQTLYFMNQSRSCILVAEPPTYISLFDLIAIIVSQVLGSPIILPIGSLFGCPEGSEIAVVNVLKLCSDKKEVEPVNGSSNMVGKEILPQDARLVQFHPLRPFYSGEIVAWRSQNGEKLKYGKVSEDVRPTAGQALYRLKIEVAPGDTQIFLSSHVFSFKSVSASSPLKESLVDGSPVLGNNRPHVDFPESSGRGESYTQVQPVREQSGKVSAAELVQAVNEILSAAGIKMDVEKQALLQRTLNLQENLKESQAALLLEQEKVEKATKEADTAKAAWICRVCLSSEVDITIVPCGHVLCRRCSSAVSRCPFCRLQVTKAIRIFRP	1011

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g00080	1011	MobiDBLite	consensus disorder prediction	861	883	-	-
	Pumo8g00080	1011	SUPERFAMILY	RING/U-box	964	1005	-	-
	Pumo8g00080	1011	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	939	1010	IPR013083	-
	Pumo8g00080	1011	Coils	Coil	921	962	-	-
	Pumo8g00080	1011	Pfam	Zinc finger, C3HC4 type (RING finger)	964	1004	-	-
	Pumo8g00080	1011	PANTHER	ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN	30	1001	-	-
	Pumo8g00080	1011	SMART	ring_2	965	998	IPR001841	-
	Pumo8g00080	1011	ProSiteProfiles	Zinc finger RING-type profile.	965	999	IPR001841	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo8g00080	921	1009	C3H Transcription Factor Family	AT1G73950	31.111	3.52e-09	58.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g00080	K17592		-	gmx:100789980	1845.48