Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00055 ATGACTGGTAAAAGTGCAATTACTCAGAGGACAGCGAGACATGGCTCACACAAACTGAGCAAATTTGATTTAGCTGATCTAGAATGGACCAGTAGGATTCCAGAGTGTCCAACATACCACCCATCAGAGCATGAGTTTGAGCATCCTTTAGTTTATCTGCAGAAGATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAGTTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGAAAGAGAAAAAAGATTTCAAGTTTGAAACAATAGTACAGCCTCTTCGTCTTTCTAAATGGAATGAAAAGGATATAATTTCCTTTTCTATGAGAGGCAGAAAATATACATATCATGAATTTGAGGCTCTTGCAAACAAGGCTTTTTTCAGTAGATTTCACAGTTCTGGAGGTCTTCCTTCTTCATATGTGGAAAAGGAGTTCTGGCATGATATGGCCTCTGGAGAGAAGGGAACAGTTGAGTATGGAGTCTGTTGA 504 0.3948 MTGKSAITQRTARHGSHKLSKFDLADLEWTSRIPECPTYHPSEHEFEHPLVYLQKIAPEASKYGICKVVSPIAASNPAAFVLMKEKKDFKFETIVQPLRLSKWNEKDIISFSMRGRKYTYHEFEALANKAFFSRFHSSGGLPSSYVEKEFWHDMASGEKGTVEYGVC 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00055 167 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Pumo8g00055 167 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 165 - -
Pumo8g00055 167 SMART JmjN_1 35 76 IPR003349 -
Pumo8g00055 167 Pfam jmjN domain 37 69 IPR003349 -
Pumo8g00055 167 Gene3D Cupin 20 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00055 Pumo-Chr8 1739421 1740605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00055 29 114 C2H2 Transcription Factor Family AT5G04240 30.233 1.24e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo8g00055 JmjN 8.3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00055 - - gmx:100809650 318.161