Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00054 ATGAATGGAGAGGATGGAGCTTCCAAGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTCATGCTACAACATGATGTGGCAGTTTACAAGGCTGTACAGAAGCCAAGAGAGTTTATCATCACCTTTCATAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTAATGGTGATTGGTTTCCACTTGGGGCTGCAGCTAGCAGGCGTTATGCACATCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTGGTTTACAAGTCCTCAAGAGTCAGAAGTTCCAAGAACAAGCCTGAAGAGACAGCATCTTATCAAACTATTATGCTGCCTTTCTTGAATCTTATGCAATTTTATAAGACACCCCTTTTGCGACTGAACAGTTCAACAAAATTGTCAAGTTCTTCAAATACATCAGGTTCTCAGCTATGCCGCCTATGCCACAGGGATTGTTATGTCGCTTACTTGCAATGCAAGTACTGCTTTTCTCATTCAATTTGTCTTTTCCATGACATTGCACTACAAACTTGTTTATGTGGTAGAGTTTATACTAATTTCAAAAGGAGTGACATTTTCACACTAGAAGAAGCTGCCAAAAGTTTTCAACAGGGAAAAGAATGTGTTGACACATTCTCTCTATCAAGTATATTCTTCTGTAACAGAGATGAATGCATCAAAGATCCTGAGAATAATCCTTGGCACAAAGAAAAAAGTGCAAGAGGAGGAACTGCTAATTCTGTAGGGGCAGCATATAAACCAAAAACAAAAGTAGCTGACAGCATCAAGCACAATATTGAAGAGAATAAGACAACAATGAAGCATTGGAGAAACAATGGGCTTCCATATGTGAAGGGTACCAAAAGGCCAGGAATCATTTAA 927 0.3894 MNGEDGASKFLAQKTTMFPPNVMLQHDVAVYKAVQKPREFIITFHRAYHAGFSHGFNCGEAVNFANGDWFPLGAAASRRYAHLRMMPLIPYEELLCKEAMLVYKSSRVRSSKNKPEETASYQTIMLPFLNLMQFYKTPLLRLNSSTKLSSSSNTSGSQLCRLCHRDCYVAYLQCKYCFSHSICLFHDIALQTCLCGRVYTNFKRSDIFTLEEAAKSFQQGKECVDTFSLSSIFFCNRDECIKDPENNPWHKEKSARGGTANSVGAAYKPKTKVADSIKHNIEENKTTMKHWRNNGLPYVKGTKRPGII 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00054 308 PANTHER LYSINE-SPECIFIC DEMETHYLASE 5 255 - -
Pumo8g00054 308 SUPERFAMILY Clavaminate synthase-like 15 98 - -
Pumo8g00054 308 ProSiteProfiles JmjC domain profile. 1 81 IPR003347 -
Pumo8g00054 308 Pfam JmjC domain, hydroxylase 7 64 IPR003347 -
Pumo8g00054 308 Gene3D Cupin 2 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00054 Pumo-Chr8 1737083 1738724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00054 11 95 C2H2 Transcription Factor Family AT5G04240 41.176 1.46e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo8g00054 JmjC 1.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00054 - - gmx:100809650 459.914