Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00047 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTGACCTTTTCCAAAAGAAGAGGTGGCCTCATGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCACAGATCGGGATCATCATCTTCTCCAGCACCGGGAAGATGTGGGAATGGTGCACTGAACCCTTCAGGATGGAGCAGATCATAGAGAAGTACCAGAGATCAACAGGAGCTCGCCTAGCGGAACGTGATCATCCCCGAGAAGAATTTTTCCATGACATGGCAATGCTGAGGCAGGAAACTATCCGTCTTGAATTGGAAATTCAACGCTATATTGGAGAGGACATGGGGGGTTTACAATATGAGGATTTGACTAAGCTTGAACAACAATTGGAGAACTCTGTGGCAAAGGTTCGAAACCGTCAGAATGAGCTCTTGCAACAGCAAATGGAGAATCTGCGAAGGAAGGAAAGGATGTTGGAAGAGGAAAACCATAATTTGTCCAATTGGATTCAGGAAGCAAGCAAACACTTCCCATTCTTTGAAGAGCAACCTGCTGGGAGCATCCTTCAACTTGCTTCCCCTGTGCTTCCACACTTTCACCCATATCTTCAGTTGGCACAGCCAAATATCCAAGACCCATAA 642 0.4611 MGRGKIEIKRIENTTTRQVTFSKRRGGLMKKTKELSVLCDAQIGIIIFSSTGKMWEWCTEPFRMEQIIEKYQRSTGARLAERDHPREEFFHDMAMLRQETIRLELEIQRYIGEDMGGLQYEDLTKLEQQLENSVAKVRNRQNELLQQQMENLRRKERMLEEENHNLSNWIQEASKHFPFFEEQPAGSILQLASPVLPHFHPYLQLAQPNIQDP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00047 213 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Pumo8g00047 213 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo8g00047 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo8g00047 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo8g00047 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo8g00047 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo8g00047 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo8g00047 213 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pumo8g00047 213 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pumo8g00047 213 Coils Coil 120 172 - -
Pumo8g00047 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pumo8g00047 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo8g00047 213 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00047 Pumo-Chr8 1654458 1658143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00047 1 213 MADS-box Gene Family AT5G23260 47.222 1.62e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo8g00047 K-box 7.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00047 - - gmx:100783876 349.747