Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00043 ATGTCCAACTCTGACGGAGCCACTAACGGCGTCACCACCCCCAACGACGCCAACAACAACGCAATCGTCGAGTCCCGAACCACTACCACCACCACCCTCGCCGTCAAGAAACCGCCGTCAAAGGACCGTCACAGCAAAGTCGACGGGCGCGGACGCCGCATTCGCATGCCGATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGCGAGCTCGGCCACAAGTCGGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACTCCGGCCAGCTTCTCCACCGTCTCCGACCACAAGCCCCTCCTCCCTCCCCCAACCCCCTTCATCCTCGGCAAACGCATTCGCCCCGACGAAGACTCCTCCAAAGACGACGCCGTCTCTCTCGTCGCGCCTCCCACGCCTCCCGCCCTGTGGGCCCTACCTCCCCGCCCCGACTTCGGCCAGGTCTGGAGCTTCGCCGCCGCCGCCGCCGCGCCCGAACTCGTGTCGGTGTCGCCGCAGAATTCCATGTTTCACCCTCACCAGCACCATCAACACCAACACCACCACCACCACCAGCAACAGCAACAGCAAGCCGCCATGGGCGAGGCCTCTGCCGCGAGGCTCGGGAATTACCTCCCCGGCCACCTCAATTTGCTCGCCTCGTTGTCCGGCGGCCACGGGAATTCCGGCCGGCGAGACGACGAGCCTCGCTGA 732 0.6639 MSNSDGATNGVTTPNDANNNAIVESRTTTTTTLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSDHKPLLPPPTPFILGKRIRPDEDSSKDDAVSLVAPPTPPALWALPPRPDFGQVWSFAAAAAAPELVSVSPQNSMFHPHQHHQHQHHHHHQQQQQQAAMGEASAARLGNYLPGHLNLLASLSGGHGNSGRRDDEPR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00043 243 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
Pumo8g00043 243 MobiDBLite consensus disorder prediction 1 36 - -
Pumo8g00043 243 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 203 IPR005333 GO:0003700
Pumo8g00043 243 MobiDBLite consensus disorder prediction 37 51 - -
Pumo8g00043 243 Pfam TCP family transcription factor 40 184 IPR017887 -
Pumo8g00043 243 MobiDBLite consensus disorder prediction 179 209 - -
Pumo8g00043 243 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00043 Pumo-Chr8 1574356 1575575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00043 17 243 TCP Transcription Factor Family AT5G23280 64.634 1.06e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo8g00043 TCP 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00043 K16221 - gmx:100795254 380.178