Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00038 ATGGATGAGCAGCAAAGGATCAGCGTTGTTGCTTCTTCTTCTAACTCTTCTTCCATGGAATCTTCTAAAAAATATGACATTTTTCTAAGCTTTCGCCGTGAAGACACTCGCAGGAACTTCACAAGCCATCTATATAAAGCTTTGAATAAAGCCAGAGTTGAAACCTACATAGACAACATGCTTGAAAAGGGAGATGAAATCTCACCAGCTCTCCTCAAAGCCATCGAAGATTCTTATATATCTGTTGTCATCTTCTCAGAAAACTATGCTTCCTCAAAGTGGTGCTTGGATGAACTCACCAAGATTTTGGAATGCAAGAATAACCAAGGACAGATTGTAATACCTGTGTTTTACAACATAGATCCATCCCATGTTAGGAAGCAGACTAGGAGCTATGAACATGCCTTTGCAAAACACGAGGAAGAACCCAAGTGCAACAAATGGAAAGCTGCTCTGACTGAGGTAGCCAATATAGCTGGGCTGGACTCTCAAACTTATAGGAATGATCCTGAATTACTGAAGGGCATTGTTGAAGACATTTTGCAAAAATTGCCTCCTAAATACCGAAATCAGCGCAAAGGACTGATTGGAATTGAGGAACATTGTAAACAGATTGAATCACTGCTAAAACTTGAGTCAAGTGAAATTATAACCCTTGGAATATGGGGCATGGGTGGCATAGGTAAGACCACTATTGCAACTGCTTTATATGACAAACTGTCTTATGAGTTCGATGGTCGTTGCTTCCTCCCAACTGTAAGGGAAAAATCAAACAAGTGTTTATGTGATGAACTTTTTTCTAAGTTGTCAAAGAATAAAAGTCATAGTTTTGATTATTCTGATATGGGTAGGCTTCAAGGTAAAAAATTCTTCATTGTCTTGGATGATGTGGCTACCTTAGATCAATTAGAAAAACTAATAAGAGAACATGATTTCTTGGGACCAGGAAGTAGAGTCATTGTCACAACTAGAAACAAACAAATACTTAGCCCAAATGATGAAATATATGAGGTGGAAGAATTGAGCTCTCATCACTCTCTTCAACTTTTTTGTTTGACTGTTTTTGGAGAAAAACAACCTAAAGATGGATACGAAGATCTATCAAGAAGAGTAATTTCCTATTGCAAAGAAATGCATGACTTGATACAAGAAATGGGTCGAGAAATTGTTCATCAAGAATCTATCAAAGACCCTGGAAGACGAAGTCGGTTGTGGAAACATGACGAAGTGTTTGATGTACTGAAATATAACAAGGGAACTGATGTTGTTGAAGGCATACTTTTAGACTTTGATAACTTAACTGGGAGTCTATGTTTGAGCTCTGACTCCTTTGCAAAGATGACTAACTTGAGATTTCTCTGTATCGAAGAAGGGTACAAGACCAGATTTAATGTGCACCTTCCTAATGGTCTTGAGTCATTGTCTGATAAATTGAGGTTCCTTTTTTGGGATGGATGTTGTCTTGAGTCTTTGCCAACTAACTTTTGTGCTGAACAGCTTGTAATGTTAATCATGCCTAATAGCAAGCTTAAAAAGCTTTGGGACGGGGTTCAGGTATGA 1560 0.3814 MDEQQRISVVASSSNSSSMESSKKYDIFLSFRREDTRRNFTSHLYKALNKARVETYIDNMLEKGDEISPALLKAIEDSYISVVIFSENYASSKWCLDELTKILECKNNQGQIVIPVFYNIDPSHVRKQTRSYEHAFAKHEEEPKCNKWKAALTEVANIAGLDSQTYRNDPELLKGIVEDILQKLPPKYRNQRKGLIGIEEHCKQIESLLKLESSEIITLGIWGMGGIGKTTIATALYDKLSYEFDGRCFLPTVREKSNKCLCDELFSKLSKNKSHSFDYSDMGRLQGKKFFIVLDDVATLDQLEKLIREHDFLGPGSRVIVTTRNKQILSPNDEIYEVEELSSHHSLQLFCLTVFGEKQPKDGYEDLSRRVISYCKEMHDLIQEMGREIVHQESIKDPGRRSRLWKHDEVFDVLKYNKGTDVVEGILLDFDNLTGSLCLSSDSFAKMTNLRFLCIEEGYKTRFNVHLPNGLESLSDKLRFLFWDGCCLESLPTNFCAEQLVMLIMPNSKLKKLWDGVQV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00038 519 ProSiteProfiles TIR domain profile. 23 184 IPR000157 GO:0007165
Pumo8g00038 519 Pfam NB-ARC domain 204 376 IPR002182 GO:0043531
Pumo8g00038 519 Gene3D Ribonuclease Inhibitor 414 517 IPR032675 -
Pumo8g00038 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 388 IPR027417 -
Pumo8g00038 519 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 160 IPR035897 -
Pumo8g00038 519 Gene3D - 181 338 IPR027417 -
Pumo8g00038 519 Pfam Leucine Rich Repeat 500 518 IPR011713 -
Pumo8g00038 519 SMART till_3 24 158 IPR000157 GO:0007165
Pumo8g00038 519 Gene3D - 21 180 IPR035897 -
Pumo8g00038 519 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 376 IPR044974 GO:0006952
Pumo8g00038 519 PRINTS Disease resistance protein signature 284 298 - -
Pumo8g00038 519 PRINTS Disease resistance protein signature 218 233 - -
Pumo8g00038 519 Pfam TIR domain 24 192 IPR000157 GO:0007165
Pumo8g00038 519 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00038 Pumo-Chr8 1466158 1468921 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00038 377 516 WRKY Transcription Factor Family AT4G12020 44.681 4.34e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00038 - - gmx:100809480 538.88