Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00025 ATGGCGGGAGTGAGGGAGCAGGACCAGTACATGCCAATAGCGAACGTGATAAGGATCATGCGGAGGATTCTGCCGGCGCACGCTAAGATCTCAGACGACGCGAAGGAGACGATCCAAGAGTGCGTGTCGGAGTACATCAGTTTCATCACTGCAGAAGCGAACGAACGGTGCCAGCGGGAGCAGCGGAAGACGGTAACCGCAGAGGATGTGTTGTGGGCAATGGAGAAGCTTGGCTTCGACAACTACGCTCACCCTCTCTCTCTTTACCTTCACCGATACCGCGAGAGCGAAGGAGAACCTGCTTCTGTCAGACGCGCTTCTGCATCTGCATCTACATCTACAATGGGGATGCACCCACGCTCACACCCACACCCACCTTATAATTCTCATGGCCATGGATTTGGAATGTTTGACTTTGACCCATCGCAAGGGTTTTACAGGGATGATGCCTCTGCTTCTGGTGGTTTTGTTGCAGCCACTTTTGATCCTTATGCTAATAACATCAAACGTGATACCCTGTGA 522 0.523 MAGVREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITAEANERCQREQRKTVTAEDVLWAMEKLGFDNYAHPLSLYLHRYRESEGEPASVRRASASASTSTMGMHPRSHPHPPYNSHGHGFGMFDFDPSQGFYRDDASASGGFVAATFDPYANNIKRDTL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00025 173 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Pumo8g00025 173 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Pumo8g00025 173 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Pumo8g00025 173 MobiDBLite consensus disorder prediction 100 123 - -
Pumo8g00025 173 FunFam Nuclear transcription factor Y subunit B-6 1 115 - -
Pumo8g00025 173 SUPERFAMILY Histone-fold 7 113 IPR009072 GO:0046982
Pumo8g00025 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Pumo8g00025 173 Gene3D Histone, subunit A 2 121 IPR009072 GO:0046982
Pumo8g00025 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00025 Pumo-Chr8 1190333 1190854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00025 5 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 64.789 1.98e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo8g00025 CBFD_NFYB_HMF 4.3e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00025 K08065 - gmx:100811633 283.493