Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00012 ATGGCTGTTGCTAAGAGCAACAGCAGCAGTGAACATTCAACTTCATATAATTGTTACAAAGTAGCAAGCTTGACCGAAACCATATTAGACACGAACCAAATCTCTAATTTGAAAGATCGATATGTTCTTGGAGAGCAGTTGGGTTGGGGGCAATTTGGTGTCATAAGAGCATGCTCTGACAAGCTGACTGGAGAGGTTTGGGCCTGCAAATCTATTGCTAAAGATAGGTTGGTTACTTCAGATGATCAGCAGAGTGTTAAACTTGAGATCGAGATAATGGCTAGGTTATCTGGGCACCCAAATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGATTTTGTTCATTTGGTGATGGAGCTTTGTGCCGGAGGAGAGTTGTTTCATCTGTTAGAGAAGCATGAACGGTTTTTTGAATTTGAAGCCAGGATTCTCTTTAGGCAACTCATGCAGATGGTTTTGTATTGTCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTGGCAACTAGAGCTTCCTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGCAGGACAGAGTTTGCATGGGTTAGTTGGGAGTCCATTGTATATAGCTCCAGAGGTACTGGCAGGTGCATATAACCAGGCTGCTGATGTTTGGAGTGCAGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACAAAGTCACGGATATTTGAAGCTATTAAGACTGCTAACCTGAGGTTTCCACCCGAGCCTTGGGATTGCATTTCTGAATCAGCTAAGGATTTGATTAGGGGAATGCTCTGCAGAGAATCTTCTCGGAGGCTCATTGCCAAGGAGGTTTTGGATCATCACTGGATGGAAAGCAATCAAACAAATCCTGAACAACTAAGTGAACATAAAATTAGAAGTTGTGGAGAGTGGGATGTTGGTAGCAACTCATTCTCTACCTCGTTTATGTCCAGGAATAAGGACATCAGCTTTGGCGCTGAATCTCCTACATGTGACGCTCAATCGCCTACATTCACATGCAAATCATCATTTTCTTCCTTTTTTGAGGAACCAGTGACACCTTGTTCTGTTTCTGGTGGATTTTCATTTCACAGCTCAGGTGGTTCCACTGATTTGGAATTTTCTTCTACTATTCCCTCAATGCCTAGCTTTGCATTTCTCAGCTCCAGTTCTGTTGTTGAGCAAAGGGGTTGTATATCAGAATTCCTAACTAACACGTCAAATGTAAATGCAATTACTGGAGGTTCTCCCCTTTGCTTTGGACATGATGCTAAAGAGATGGATTGCAAGCCTAAAGAGGGTAAAAGGGCAGGTGGAACAAATGGCCATAGGGCATTGGGATTCCACAACAAGAGAAACCGGACAATTGGACTCGGCGAGCGTGAGCAACTTGATCTTGTGGTGACTGAATCAGTCATTCGTTGGTCATCATGCACCCACCTTCCTGCATCACCAAGATCATCTCTCGTCTGTTGA 1527 0.4342 MAVAKSNSSSEHSTSYNCYKVASLTETILDTNQISNLKDRYVLGEQLGWGQFGVIRACSDKLTGEVWACKSIAKDRLVTSDDQQSVKLEIEIMARLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHERFFEFEARILFRQLMQMVLYCHENGVVHRDLKPENILLATRASSSPIKLADFGLATYIKPAGQSLHGLVGSPLYIAPEVLAGAYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFEAIKTANLRFPPEPWDCISESAKDLIRGMLCRESSRRLIAKEVLDHHWMESNQTNPEQLSEHKIRSCGEWDVGSNSFSTSFMSRNKDISFGAESPTCDAQSPTFTCKSSFSSFFEEPVTPCSVSGGFSFHSSGGSTDLEFSSTIPSMPSFAFLSSSSVVEQRGCISEFLTNTSNVNAITGGSPLCFGHDAKEMDCKPKEGKRAGGTNGHRALGFHNKRNRTIGLGEREQLDLVVTESVIRWSSCTHLPASPRSSLVC 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00012 508 Gene3D Transferase(Phosphotransferase) domain 1 128 329 - -
Pumo8g00012 508 Pfam Protein kinase domain 41 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00012 508 FunFam Calcium-dependent protein kinase 1 43 126 - -
Pumo8g00012 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Pumo8g00012 508 SUPERFAMILY Protein kinase-like (PK-like) 38 364 IPR011009 -
Pumo8g00012 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 322 - -
Pumo8g00012 508 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Pumo8g00012 508 ProSiteProfiles Protein kinase domain profile. 41 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00012 508 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Pumo8g00012 508 SMART serkin_6 41 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00012 508 FunFam Phosphoenolpyruvate carboxylase kinase 128 316 - -
Pumo8g00012 508 CDD STKc_CAMK 40 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00012 Pumo-Chr8 164704 167874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00012 37 307 EF-hand Containing Proteins AT3G57530 49.077 8.86e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo8g00012 Pkinase 5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00012 - - gmx:100776088 782.326