Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo85g00005 ATGAATCAAAACCAGCTCCAGCCCCTGCCTCTCCTTAGCAGCTTCCTAGGTTCATCTCCTGAAGAAGAATCTTTGCTACAAAACCAAAATCCTAAGGCATGCCATGGTCATCAAGTTGAGGATGTCACAGTGGCCTTACACATAGGCCTCCCTGACCATTCAAGTGCCTCCACCAATAATAATCATGGATTTGTGAATGCCACAGCTCAAGTTCCTAACAATTACTGGATACCAACTCAAGAGCAGATCCTCATTGGGTTTAGCCATTTCTCTTGTCCTGTGTGCCTCAAAACCTTCAACCGCTACAACAACCTTCAGATGCATATGTGGGGACATGGGTCACAGTATCGAAGAGGCCCCAGACTCGCTGAAACGAACCCATCCACGACCCTTGTTGGGACATTCCCTGCTACCTGTTGCTCAAGAGGGTGCAAGAACAACATCGAGCACCCACGAGCCCAGCCTCTCAAGGATTTTCGAAACCCTTCAGACACACTACAAGAGGAAGCACGGTGCCAAGCCCTTCACGTGCCGCAAGTGTGCCAAGCCTCTCGCCGTCAAAGGTGA 567 0.4991 MNQNQLQPLPLLSSFLGSSPEEESLLQNQNPKACHGHQVEDVTVALHIGLPDHSSASTNNNHGFVNATAQVPNNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPRLAETNPSTTLVGTFPATCCSRGCKNNIEHPRAQPLKDFRNPSDTLQEEARCQALHVPQVCQASRRQR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo85g00005 188 PANTHER ZINC FINGER PROTEIN WIP2 9 161 IPR043584 GO:0003700|GO:0010468
Pumo85g00005 188 SUPERFAMILY beta-beta-alpha zinc fingers 85 112 IPR036236 -
Pumo85g00005 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Pumo85g00005 188 FunFam zinc finger protein WIP2-like 89 112 - -
Pumo85g00005 188 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Pumo85g00005 188 Gene3D Classic Zinc Finger 89 112 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo85g00005 1 182 C2H2 Transcription Factor Family AT1G34790 42.574 5.49e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo85g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo85g00005 - - gmx:547675 240.736