Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo84g00003 ATGGAAGAAGGATCTGGCGAGAAATGGAACAGTGTATGTAGAGAGTGCTTGAAAAACCATGCAGCGAACCTAGGAAGCTATGCAACAAATGGGTGCGATGAGTTCACAGTGGATGATGAGGGCTACAAGCACAATATCGCTTGCGAGGTTGCAACTTGTGGAGCGATGACGATGGATGGAGGGTGGCTCGACGATGGACGAAGGTTGCTTGATGGTTGGCGACGAGGAGCTTTAGGAACTAGGATTTGA 249 0.494 MEEGSGEKWNSVCRECLKNHAANLGSYATNGCDEFTVDDEGYKHNIACEVATCGAMTMDGGWLDDGRRLLDGWRRGALGTRI 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo84g00003 82 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 66 IPR006456 -
Pumo84g00003 82 Pfam ZF-HD protein dimerisation region 14 53 IPR006456 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo84g00003 14 53 ZF-HD Transcription Factor Family AT2G02540 46.341 9.39e-07 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo84g00003 ZF-HD_dimer 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo84g00003 - - pvu:PHAVU_002G332400g 71.2478