LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g02260	ATGGGCCCCACTCTCCCTTTCGACTTGATAAAAGAAATCCTCCTGAGATTGCCCGTCAGATCCATTCTGCGTTTCAAGTGTATTTGCAAGGCATGGCGTTCTCTAATCTCCGATCCCCAATTCGCCGTTTCCCATCACGACCTAGCCGCCGCGCCCTCCCATCGTCTCCTCCTCAGATCCGACGATTTCTACCTCGAATCCATTGACGTCGAAGCGCCGCTTTGGGCATGTCCCGATGCATTACATTTCCATTTCCGTATTCCGCCTCCACCTCCCCAACCCCACGGCGTGTTTGACTATTACGCCGACGATCACAGCAATGCAAAACACGAGATTTTGGGTTCGTGCAGAGGACTCGTGCTCTTGCAGTACTGGCAAACCTCTGATCTCATTGTATGGAATCCATCGACCGACTCCCGCGAGGAATTACGAGTCTTTGACAATGCAACATCCTATCCTCAGCTGTTTGGTTTTGGTTATGACCCATCAACTGATGACTACTTGCTCGTTGATATCGCATTGGAAATTGAAAGGAAGCCATTCTCGATTTTGTCCTTCAAAACTGGTTTGTGGGACAATGGCCATATGCAGGTTTCATACGGCATTCTCGACCAGGATAAATTCAGAGGTGGGTCGCTCCTCCATGATTCTCTACATTGGCTGGTTTTCTCCGAGGATAAACGGGTTCCTGTCATTCTGGCCTTTGATCTCGTACAGAGGAGTTTTTCGGAGATTCCTCTGTTAGATGATTTAACTACGGATTTATATGAACTGTATAGTTTGAGGGTAATCGGAGGATGTCTCGCTGTGTGTTGCTCGGTCCAAGGCACTGAAACAGCTGAAATATGGGTGATGAAACAATATAAAGTGCACACGTCTTGGACCAAGTCCGTTGTTTTAAATACTAATGGCATTCCTCACAATTGCTTTTCCCCGATGTGGATCACCAAAGATGGTGGGATTTTTGGATCAAATATCAGAGGAACATTAGAGAAAGTCAATGACAAAGGAGAGCTGCTTGAGCATCTCAAATATGGTCGACCTCAAAGGTTGTACAAAGACAATCTACATGTTGCTATGTATATAGAGAGTCTACTGCCAGTGAGTGTCATCGGGGGAAACAAGAAAAATCAGGAGTCTGAATCTACAAATTCAAAATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCCAAGTGGTTCCTTTGGAAGAGAGCAGTATCTCAGACGAATTTGTGGAAAATGGAACTGAAAGTGTGTCTGGACAAGAGGAAGACACTGAGCAGTATTTTAGTTTTCTGAAAGTCTTGACTGAGGGGAACAATTGGAGGCGGCAATGTGGAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTGTGTGTGAAGGTAATTTGATGGCTCTGGAAAGTGGAGCAATGGCTCTCTTCAACCTAGCTGTGAATAATAATAGGTCTGCTTTATATTTCTAG	1545	0.4537	MGPTLPFDLIKEILLRLPVRSILRFKCICKAWRSLISDPQFAVSHHDLAAAPSHRLLLRSDDFYLESIDVEAPLWACPDALHFHFRIPPPPPQPHGVFDYYADDHSNAKHEILGSCRGLVLLQYWQTSDLIVWNPSTDSREELRVFDNATSYPQLFGFGYDPSTDDYLLVDIALEIERKPFSILSFKTGLWDNGHMQVSYGILDQDKFRGGSLLHDSLHWLVFSEDKRVPVILAFDLVQRSFSEIPLLDDLTTDLYELYSLRVIGGCLAVCCSVQGTETAEIWVMKQYKVHTSWTKSVVLNTNGIPHNCFSPMWITKDGGIFGSNIRGTLEKVNDKGELLEHLKYGRPQRLYKDNLHVAMYIESLLPVSVIGGNKKNQESESTNSKSVNSVSSCKLKGVQVVPLEESSISDEFVENGTESVSGQEEDTEQYFSFLKVLTEGNNWRRQCGVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVCEGNLMALESGAMALFNLAVNNNRSALYF	514

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g02260	514	PANTHER	OS02G0783600 PROTEIN	10	301	-	-
	Pumo7g02260	514	Pfam	F-box domain	5	40	IPR001810	GO:0005515
	Pumo7g02260	514	CDD	F-box_AtFBW1-like	3	41	-	-
	Pumo7g02260	514	ProSiteProfiles	F-box domain profile.	1	45	IPR001810	GO:0005515
	Pumo7g02260	514	Pfam	F-box associated	215	307	IPR006527	-
	Pumo7g02260	514	SUPERFAMILY	ARM repeat	427	510	IPR016024	-
	Pumo7g02260	514	Gene3D	-	4	41	-	-
	Pumo7g02260	514	SUPERFAMILY	F-box domain	5	57	IPR036047	GO:0005515
	Pumo7g02260	514	NCBIfam	F-box protein interaction domain	115	321	IPR017451	-
	Pumo7g02260	514	SMART	fbox_2	5	45	IPR001810	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo7g02260	Pumo-Chr7	64400928	64403773	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo7g02260	379	510	U-box Gene Family	AT1G67530	56.429	3.27e-35	138

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g02260	-		-	gmx:102663745	398.282

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