Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02259 ATGGCGTCTTCATCCTCCGACTCCCACTTGGTCTACGACGTGTTTTTAAGCTTTAGAGGAGAAGACACGCGAAAGACTTTCGTGTCTCATCTGCATGCTGCCCTCTCAAATGCGGGAATCCACACTTTCATCGATGACAAGCTTCGCAAGGGAACGATTTTGGGAGCAGAACTACTGCGAGCCATAAAACGATCTGGGATATCCATCGTGGTTTTCTCCACTAACTACACTTCATCTAGCTGGTGTCTTCGAGAGCTGGTCAAAATCATGGAATGCCGTAAGCTGTACGGCCAGGTGGTTATGCCCGTATTTTACGATGTTGATCCATCGGATGTACGTCATCAAACAGGTGCTTTTGGAGAACGCTTGAAAGCACTTATACAAAAATGTGCACCCAACAAATATTTACCGGAAGACATGTACCATATGTTTACGAGTTGGAAGAGTGCACTAAAGGAGGCTGCAGATTTGTCTGGTTGGGATGCGAGGAATTGGAGGACTGAAAGTGACCTAGTGAAGCAAATTGTTGAGGACATTTCTAGAAAACTAGACACTGGATTATTGTCTGTTACCAAATTCCAAGTTGGATTAGAATCCCGAGTCCAAGAAGTGATTGAGTTTATTAATGCTCAATCAGGCAGAGTTTGTGTTGTAGGGATCTGGGGAATGGGTGGATTGGGTAAAACAACCATGGCCAAACTCATCTACAATAAGATTCAGCGGAGATTCAGGTGTAGCAGTTTCATTGAAAATATTAGACAAGTTTGTGAAAAGGATAGTAGAGGGTGTATTTATTTGCAACAACAACTTCTTTCTGATCTCCTAAATATTTCAGTGAACAAAATACGTAGGATGGGGATGGTGGCAACTAAGATTGAGAGACTTGGTGGAGTAAGGCCTCTTATTGTACTTGATGATGTGACTGATGTTAACCAATTGCATGCCCTATATGTAAATGGTAGATGGATTGGTGAAGTAATAATCATTACAACCAGAGATGTACGCCTACTCAATGTATTTACATCTTATCATAAAGTCCATGTTTGTAGAATAAGGGAAATGGACGAAAAGGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGACAAGCACATCCAAGAGAAGACTTGATTAAACTCTCAATGGACATAGTTGCTTACTGCAGAGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATTTGATAGGACAAAAGAAGAATGGGAAAGTGCCTTGTCAAAACTAAAGAAAATTCCCAATGATCAAGTACAAGAGAAACTGAGAATAAGCTATGATGGTTTAGATTGTGAGGAAAAGAATATATTCCTTGATATATGTTTTTTCTTTATTGGCAAGGACAGAGCCGATGTTACAGAGATACTAAAAGGTTGTGGCCTTCATCCTGAAATCGGAATAACAATCCTGGTTGAAAGGAGCCTCATAAAGCTTGAAAAGAATAATAAGCTCAAAATGCATGATTTGCTACGTGACATGGGAAGAGAAATTGTTCGTCAAAGTTCTCCTGAGGAACCTGAGAAGCGTAATCGATTGTGGGATCACCAAGAAGTACTTGATTGTTGTCAGAACATATTGTAA 1602 0.4057 MASSSSDSHLVYDVFLSFRGEDTRKTFVSHLHAALSNAGIHTFIDDKLRKGTILGAELLRAIKRSGISIVVFSTNYTSSSWCLRELVKIMECRKLYGQVVMPVFYDVDPSDVRHQTGAFGERLKALIQKCAPNKYLPEDMYHMFTSWKSALKEAADLSGWDARNWRTESDLVKQIVEDISRKLDTGLLSVTKFQVGLESRVQEVIEFINAQSGRVCVVGIWGMGGLGKTTMAKLIYNKIQRRFRCSSFIENIRQVCEKDSRGCIYLQQQLLSDLLNISVNKIRRMGMVATKIERLGGVRPLIVLDDVTDVNQLHALYVNGRWIGEVIIITTRDVRLLNVFTSYHKVHVCRIREMDEKESLELFSWHAFRQAHPREDLIKLSMDIVAYCRGLPLALEVLGSYLFDRTKEEWESALSKLKKIPNDQVQEKLRISYDGLDCEEKNIFLDICFFFIGKDRADVTEILKGCGLHPEIGITILVERSLIKLEKNNKLKMHDLLRDMGREIVRQSSPEEPEKRNRLWDHQEVLDCCQNIL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02259 533 Gene3D - 187 347 IPR027417 -
Pumo7g02259 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 447 IPR027417 -
Pumo7g02259 533 FunFam Disease resistance protein (TIR-NBS-LRR class) 355 437 - -
Pumo7g02259 533 Pfam NB-ARC domain 198 423 IPR002182 GO:0043531
Pumo7g02259 533 Gene3D - 353 437 IPR042197 -
Pumo7g02259 533 SMART till_3 11 157 IPR000157 GO:0007165
Pumo7g02259 533 Pfam TIR domain 12 188 IPR000157 GO:0007165
Pumo7g02259 533 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 185 - -
Pumo7g02259 533 Gene3D - 7 186 IPR035897 -
Pumo7g02259 533 PRINTS Disease resistance protein signature 388 402 - -
Pumo7g02259 533 PRINTS Disease resistance protein signature 217 232 - -
Pumo7g02259 533 PRINTS Disease resistance protein signature 294 308 - -
Pumo7g02259 533 ProSiteProfiles TIR domain profile. 10 183 IPR000157 GO:0007165
Pumo7g02259 533 SUPERFAMILY "Winged helix" DNA-binding domain 424 526 IPR036390 -
Pumo7g02259 533 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 160 IPR035897 -
Pumo7g02259 533 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 528 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02259 Pumo-Chr7 64389678 64391536 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02259 419 522 WRKY Transcription Factor Family AT5G45050 31.429 3.02e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02259 - - gmx:100809413 805.823