Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02225 ATGGAAAACCAGTTCTTTCTGAATGGTGGGGTGTCACAAGCCCTTCACTTTGAACCTTCACCACCACCTCCTCCTCCTCCTCCTTCTTCATTGCCCTCTTGGCAATCAGTATCACCAAACATGGGAATTCAACCAGCAGTTCTGAATTGTGCCTCTGAGCAAACCCAAGATTGCTTTTACAACCCCAATTGGGACAAGTCAACAACAGATCATGGCCTTCATCGCTTTGATTCCTCAGCACTGAGTTCAATGGTTTCATCACCAGCAGCATCATCCAACCCCAACAACATGTCTAATGAGAATTTCATCATCAGGGAATTGGTGGGGAAATTGGGAGCTATTGGGAGCTCTGATGAGATCCCACAGCACTCTCCTTATCCTCTGGTTGTGGCATCTTCTTACATGAATAATGGCAATAACAGCACCAACACTTCATGCTACAGCACCCCTTTGAGCTCCCCTCCAAAGGTGAACATTGTCCACAGTCTGGTGAATGAGAGGTTGGCAAATTTGGGAGGAAAGTCAATGGCTTTGAATTCCAGTGTGGCTGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTTAATGATAGGAGTGTCCAATTGGGGGTGAACAATGCTGAATTGGCTCAAAGATCTGCACCAGTAATGGAACATGGTGTGAAGTTACCTAGAGTCTCTAGTAGTCCATTGCTCAAAACACTTGGATCTCAAATGGGTGCCCAAGAGAACAAGAATTCAGCATTTCAGGAGCAGGAGAAAATGGAAGGGGCCAATTCTCAAGAGGAATCTACAATTTCTGAGCAAACCCCAAATGCGGAAATTGGGGTGAAAACTTCCCAAGATATGATGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAAACTCTACTAATCCTACCAAGGGTGAAGCTAGTGAGAATTCAAATTCAAAACGTACCAAGCCTAATGAGGGTGAGGGAAAAGAAAATGGCCCAGTGAAGGTTGAGGAAGAGTCCAAAGCAGCAGAAGAGAAACAGAACAAAAGTTACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTCGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGCAAGGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCTATGAAATTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGAGAGTCCTGTTTCAAAAGATGTATTCCAATCAAATAACTCTTTGGCAACACACCCAAATGCAATATTCCCATTAGATTCCTCAGCACAAGCCTTTTATGGACACCAGCCTCAGCAAAACAACCCAGTTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGATACTTCTTTGTGCCAAAATCTTGCCATGCAGTTACCTCCCCTAAATGTGTTTAATGAAGGTGGCTCTCAGTTTCCATTAACATTCTTAGAGGATGATCTCCACACCATTGTTCAGATGGGGTTTGGCCAAACTGCTAACAGGAAAATACCAATACAATCCCCGAGTTTCAACGGTTCAAATAATGTACCCCAGATGAAAGTTGAGCTCTGA 1752 0.4389 MENQFFLNGGVSQALHFEPSPPPPPPPPSSLPSWQSVSPNMGIQPAVLNCASEQTQDCFYNPNWDKSTTDHGLHRFDSSALSSMVSSPAASSNPNNMSNENFIIRELVGKLGAIGSSDEIPQHSPYPLVVASSYMNNGNNSTNTSCYSTPLSSPPKVNIVHSLVNERLANLGGKSMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSVQLGVNNAELAQRSAPVMEHGVKLPRVSSSPLLKTLGSQMGAQENKNSAFQEQEKMEGANSQEESTISEQTPNAEIGVKTSQDMMNSRKRKASSKGKAKETSNSTNPTKGEASENSNSKRTKPNEGEGKENGPVKVEEESKAAEEKQNKSYSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESPVSKDVFQSNNSLATHPNAIFPLDSSAQAFYGHQPQQNNPVIHNNIPNRTVTHCSVDPLDTSLCQNLAMQLPPLNVFNEGGSQFPLTFLEDDLHTIVQMGFGQTANRKIPIQSPSFNGSNNVPQMKVEL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02225 583 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 430 IPR011598 GO:0046983
Pumo7g02225 583 MobiDBLite consensus disorder prediction 17 33 - -
Pumo7g02225 583 Coils Coil 427 447 - -
Pumo7g02225 583 CDD bHLH_AtBPE_like 370 454 - -
Pumo7g02225 583 MobiDBLite consensus disorder prediction 248 293 - -
Pumo7g02225 583 Pfam Helix-loop-helix DNA-binding domain 384 431 IPR011598 GO:0046983
Pumo7g02225 583 SMART finulus 386 436 IPR011598 GO:0046983
Pumo7g02225 583 MobiDBLite consensus disorder prediction 308 324 - -
Pumo7g02225 583 MobiDBLite consensus disorder prediction 325 371 - -
Pumo7g02225 583 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 378 449 IPR036638 GO:0046983
Pumo7g02225 583 MobiDBLite consensus disorder prediction 13 38 - -
Pumo7g02225 583 Gene3D - 377 451 IPR036638 GO:0046983
Pumo7g02225 583 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 259 483 IPR024097 GO:0006355
Pumo7g02225 583 MobiDBLite consensus disorder prediction 248 371 - -
Pumo7g02225 583 FunFam Basic helix-loop-helix transcription factor 377 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02225 Pumo-Chr7 63002565 63005513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02225 1 543 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.367 1.95e-99 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g02225 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02225 - - gmx:100801233 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01616 5 42610538 42613667 Pumo7g02225 7 63002565 63005513 PCT