LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g02213	ATGCTTCGGTTTCTCCCAACTGGGTCAAACATTTTCCAGTCTTTTCCACGCGCCGCAGTTATAACAGCCCTGCGAGCGTTCACTTCCGCCACCTGTTCGACCATTGGCCTCACCCAAACCAAGGTTGAAGTTGAAGATGACAAAAACAAATGGAGCGATGCTGCTGAACTTTTGAGCAAATGGGGTTGCTGTGACGATGATTTGGTGAGAATATTCTCGCGTTGCCCCTCATTGCGCAATGCTGATCCCACGCAGGTTCAGTCCAAACTGTGCCTGCTGAGTGATCTGGGCTTATGTGCATCTGAACTTGTGAAGATTGTCAATTGTAGGCCACGGTTTTTCCGGTCTCGGATTAACAGTTGCTTAGAAGAGAGGATGGCACATCTTGCATCGTTGTTTGAGACAAAAGAAGTGCTTCAGAAGGCCATTGTGAGGAACCCTTCGTTGTTGCTATCTGAGGGATATAATGTTAAGGCAACGGTTGAGCTCTATGAGAAGTTGGGCGTTAAGAAAGGGGACTTGATTCAGATGCTCCTTTTGCGGCCCACGGTTATTTCGAGGACTTCCTTTGATGCTGAGAAGCTGGAATATTTAAGCAAGACTGGGCTTACCAAGGATTCCAAGATGTATAAATATGTGGTGACATTAATAGGAATCTCTCGCGTGGAAACGATTCGGGATAAGGTGGCAAATTTCGCGAAGTTTGGGTTTTCCGAAGAGGAGATATTTGGTCTTGTGGGGAGGTCTCCTAATGTATTGACATTGTCAACCGATAAGGTTCAGAGGAACATGACTTTCATGTTGGGCACGATGAAGCTTGATGCTAAGATGGTTCTAAAGCAGCCGTATCTCTCATAG	858	0.4627	MLRFLPTGSNIFQSFPRAAVITALRAFTSATCSTIGLTQTKVEVEDDKNKWSDAAELLSKWGCCDDDLVRIFSRCPSLRNADPTQVQSKLCLLSDLGLCASELVKIVNCRPRFFRSRINSCLEERMAHLASLFETKEVLQKAIVRNPSLLLSEGYNVKATVELYEKLGVKKGDLIQMLLLRPTVISRTSFDAEKLEYLSKTGLTKDSKMYKYVVTLIGISRVETIRDKVANFAKFGFSEEEIFGLVGRSPNVLTLSTDKVQRNMTFMLGTMKLDAKMVLKQPYLS	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g02213	285	PANTHER	CGI-12 PROTEIN-RELATED	41	283	IPR003690	GO:0003690\|GO:0006355
	Pumo7g02213	285	SMART	mt_12	207	238	IPR003690	GO:0003690\|GO:0006355
	Pumo7g02213	285	SMART	mt_12	243	274	IPR003690	GO:0003690\|GO:0006355
	Pumo7g02213	285	SMART	mt_12	69	99	IPR003690	GO:0003690\|GO:0006355
	Pumo7g02213	285	SMART	mt_12	140	170	IPR003690	GO:0003690\|GO:0006355
	Pumo7g02213	285	SMART	mt_12	104	135	IPR003690	GO:0003690\|GO:0006355
	Pumo7g02213	285	Pfam	mTERF	111	282	IPR003690	GO:0003690\|GO:0006355
	Pumo7g02213	285	Pfam	mTERF	56	184	IPR003690	GO:0003690\|GO:0006355
	Pumo7g02213	285	FunFam	Mitochondrial transcription termination factor family protein	122	285	-	-
	Pumo7g02213	285	Gene3D	Transcription termination factor 3, mitochondrial	33	201	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo7g02213	Pumo-Chr7	62335642	62336838	Dispersed/Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Pumo7g02213		mTERF	4.7e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g02213	K15032		-	gmx:100799629	508.449