LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g02143	ATGAACGAGGCTAGAAGTCTGGAAAGGAAGAGAATGTATATCAACATATCTGGACCAACTCTCCCCTTAATAAAAAAACAAAAAGAAACTGATTTGGGCCACATAAGCCCATTTCCGGGGCCCAAAATCTCCGCGAAGCAGGGTAAAACCCTAGTTCATTTCGTGCGCACGTTCCAAGTCTTGAAGCTCTCAACAGAGGCATCGTTCGTTCTTCTCGCAGGAACAGACTGCACAATGAAGTTCAACATTGCAAATCCAACCACTGGCTGCCAGAAGAAGCTCGAGATCGATGACGATCAGAAGCTACGGGCATTTTGGGACAAGAGGATTTCCCAGGAGGTCAGTGGAGATGCTCTGGGTGAGGAGTTTAAAGGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTAACACCTGGTCGTGTTCGTCTTTTGCTCCACAGAGGAACTCCTTGCTTCCGTGGGTATGGAAGACGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGATCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAAGGCGAAAGTGATTTACCAGGGCTGACTGATGTTGAAAAGCCAAGAATGAGGGGTCCAAAGAGAGCATCCAAAATTCGTAAGCTATTCAACCTGTCTAAGGAAGATGATGTGAGGAAGTACGTCAACACATATCGCCGAACCTTCACAACAAAATCTGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAGCGACTCGTCACTCCATTGACACTTCAAAGAAAGAGGGCAAGGATTGCTGATAAGAAGAAGAGAATCGCAAAGGCAAAATCCGAGGCAGCTGAGTATCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGGGATCGCCGCAGTGAGAGTTTGGCAAAGAAGAGATCCAAGCTTTCCAGTATTGCTAAGCAAGCTGCCACTGCGTAG	984	0.4685	MNEARSLERKRMYINISGPTLPLIKKQKETDLGHISPFPGPKISAKQGKTLVHFVRTFQVLKLSTEASFVLLAGTDCTMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSKLSSIAKQAATA	327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g02143	327	ProSitePatterns	Ribosomal protein S6e signature.	130	141	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Pumo7g02143	327	MobiDBLite	consensus disorder prediction	296	327	-	-
	Pumo7g02143	327	Coils	Coil	267	294	-	-
	Pumo7g02143	327	Hamap	30S ribosomal protein S6e [rps6e].	10	195	IPR020924	GO:0003735\|GO:0005840\|GO:0006412
	Pumo7g02143	327	Pfam	Ribosomal protein S6e	79	206	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Pumo7g02143	327	MobiDBLite	consensus disorder prediction	296	315	-	-
	Pumo7g02143	327	Gene3D	-	211	312	-	-
	Pumo7g02143	327	PANTHER	40S RIBOSOMAL PROTEIN S6	79	318	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Pumo7g02143	327	SMART	Ribosomal_S6e_2	79	206	IPR001377	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo7g02143	Pumo-Chr7	59120413	59125067	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo7g02143	79	327	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	72.289	9.30e-120	341

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g02143	K02991		-	gmx:100800507	442.965