Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02128 ATGTGCAATCCTTCAAAAAATAATATGCCTCCTTTCAATGTGAATGTTCTGGTTGTTGATGGAGATGCTACTGCACTGAACACAACAATGGAAATACTAACTTCCTTGAATTACAAAGGTACCACACATTCCTCACTTGCTTTGGATGAACTTCGTAAGCATCAAGGATATTTTCATCTCATTATTATGGAAGTTCATATGCCGAATCTTGATGGATTCAAACTAAAACAAATCATTGATGAAGAGTTTGCAATACCAGTTATAATGATTTCAGTTGACAAAAGTGAAGAAATCCAGAAAAAAGCTTTAATGTCTGGTGCAATGCGATATATCTTTAAACCAGCAAGAACAGAAGACTTTGTGGGTATTTGGCAATTTGCAGTGCCTATAATGAAAGGTAAGATTCTAACTAACACAAAATTAGTTGGAGATATCATTGAAGAATCAAGTGGTAAGAGTGGTGACATGGAACAATCATCCGTGGATACTGGAAAAGATAATGGATCTACTACCCCTAAGAAGACCAAAGTTTTTTCTAGAAAGATAATGGATCTACTACCCCCAAGAGCAAAATCAAATGGTGAGAGCAAGCATCACAAAGAAGATAGCAGGGTTGAGGAAAAGAGTGATGACATGGAACATTCACCAATGAAAATTGGGGAAGATAATGGATCTACTAACCCTAAGAATAACAAAGTTGTTTGGACAGAAGATCTTCAAAGGCGATTCTTGGAAGCCATTGATATTCTTGGCCCAGACTATGAAGTTCCAACGAGAATTCTTGAAGTCATGAATGTTAAAGGGTTAACTAGGAGAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTATTTAGGACGAGTTGAAAGAATATTTGCCGCGGTAATAAAGAAAGCACATGAAGACAATGATGCTTTTTTGTCTAAGAAGGCATCAACAGACTCGTCACTAGTGTTTAAACTCATTGAAGAAGATTTGAAACGAACTATGAAACGAAGAAAAAGGAGAAGTTTAGAATATTTTGCATCTGATGACGTATATATATCTCACTTAAGATTCAAAGTATCAAATTTGTTGAGAAAGTCTAACAACAAAAAGGATTCTCTATCAGGCAAAACTAATAGCCTTGCAACAAAACCATGCCCTAATGCTAATGTTGCATTAAGTCCTTCAAATTTAGTACAACATAATGAGCCATTACAAAATACCCCAATTAGCCCTTCTGGAATACTTAGATTGGGCCAAGCATCAAGTTCCAATGTTGTAGGGTTGTTGGAACCTAGTTCTTCTAGTTTGGTTGGGGGAGTAGGGTGTACTACTGGTGAGGTTTATAGCAAAAGCCAAACTTTGCCAATATCAATGGGAGGCACTAACACTGTTGAAAATATTGTCATTGGAGGAAACTTATTTGAACCTCAACAACAACACCAGATTTGTAATCAACAATATCATCAAACTTTCGCAACTGTGGACAACAATTTTGCTTCTCAAGAAACATCTTATGAATCCTATTTCAAAGGAATTGATGAAGCTTTCTCAATGGAAGACATTCTCAATAAAGAACCCATGCAGGAGGGGGACTTTGCTACCATTGAATCCATTTTGAATGATTGGTGTAAATGA 1623 0.3629 MCNPSKNNMPPFNVNVLVVDGDATALNTTMEILTSLNYKGTTHSSLALDELRKHQGYFHLIIMEVHMPNLDGFKLKQIIDEEFAIPVIMISVDKSEEIQKKALMSGAMRYIFKPARTEDFVGIWQFAVPIMKGKILTNTKLVGDIIEESSGKSGDMEQSSVDTGKDNGSTTPKKTKVFSRKIMDLLPPRAKSNGESKHHKEDSRVEEKSDDMEHSPMKIGEDNGSTNPKNNKVVWTEDLQRRFLEAIDILGPDYEVPTRILEVMNVKGLTRRNVASHLQKYRLYLGRVERIFAAVIKKAHEDNDAFLSKKASTDSSLVFKLIEEDLKRTMKRRKRRSLEYFASDDVYISHLRFKVSNLLRKSNNKKDSLSGKTNSLATKPCPNANVALSPSNLVQHNEPLQNTPISPSGILRLGQASSSNVVGLLEPSSSSLVGGVGCTTGEVYSKSQTLPISMGGTNTVENIVIGGNLFEPQQQHQICNQQYHQTFATVDNNFASQETSYESYFKGIDEAFSMEDILNKEPMQEGDFATIESILNDWCK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02128 540 MobiDBLite consensus disorder prediction 187 231 - -
Pumo7g02128 540 MobiDBLite consensus disorder prediction 191 218 - -
Pumo7g02128 540 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 382 IPR045279 GO:0009736
Pumo7g02128 540 Pfam Myb-like DNA-binding domain 233 282 IPR001005 -
Pumo7g02128 540 ProSiteProfiles Response regulatory domain profile. 15 128 IPR001789 GO:0000160
Pumo7g02128 540 FunFam Two-component response regulator 226 289 - -
Pumo7g02128 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 286 IPR017930 -
Pumo7g02128 540 SUPERFAMILY CheY-like 14 128 IPR011006 -
Pumo7g02128 540 Gene3D - 226 289 - -
Pumo7g02128 540 SMART REC_2 14 124 IPR001789 GO:0000160
Pumo7g02128 540 MobiDBLite consensus disorder prediction 152 173 - -
Pumo7g02128 540 NCBIfam myb-like DNA-binding domain, SHAQKYF class 230 283 IPR006447 GO:0003677
Pumo7g02128 540 SUPERFAMILY Homeodomain-like 228 286 IPR009057 -
Pumo7g02128 540 Gene3D - 5 129 - -
Pumo7g02128 540 MobiDBLite consensus disorder prediction 150 173 - -
Pumo7g02128 540 Pfam Response regulator receiver domain 16 120 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02128 Pumo-Chr7 58730678 58736879 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02128 46 288 Response Regulator Gene Family AT3G16857 34.524 7.93e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo7g02128 Response_reg 1.4e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02128 - K14491 aprc:113850659 423.32