Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02107 ATGGATCACGAGAGAAAAACCATCACCACCAAGTTTGTGAAATCATCCAAATCCTTCCCCAAAGTTATTTGCATTTCAATGACGGATCAAGATGCTACAGACTCATCCAGTGACGAAGAAGGAGAACATGTCAAAGTGAAGAAAGTGGTTAATGAGATAAGAATCGTTTGTGTCAACAACAAAAAAAGACACAACAACAATGACAATAGTGGTTTTTGCTATGCAACCAAAGACAATGAAAGTCTCAAACAACAACAACAACAACAAAGCTTTATTCCATTAAGTGAGGTCGGCTACATGGATGATGGCAAACAAAATCTCAAACACAAGTTTCGCGGTGTTCGGCAACGGCCTTGGGGCCGGTGGGCGGCGGAGATAAGAGACCCTTCGCGGGGAAGGCGAGTGTGGCTTGGCACGTTTGACACTGCTGAAGAGGCTGCTATGGTCTATGACAAAGCTGCTATTAGTTTCAGAGGCGCGGCTGCCGTCACCAATTTCATCAAACCGCCGTTGAAGGATGATGGAACGAGTTCTGCATGTGCTTCACCCACTTCTGTTCTTGTGTTTCAGCCTTGGGTGGAACCACCATGCTTGGAAGAAACGTTCAAAGAAGAAGAAGTGTTTAACGGGTTAACGGATGGTTATGATGATGATTTCTTGTTTTCCAATGATGCACTTTGTGATCAACCTCTTCCTACGACGTTTTCTAATATTGATTGCGTTGATATTACGTTGGACGAGGATCTTGAGTCATGTAAATGGGACGTGGATAATTATTTCGCTGATGATCCTTCATTGCAACAATGA 807 0.4349 MDHERKTITTKFVKSSKSFPKVICISMTDQDATDSSSDEEGEHVKVKKVVNEIRIVCVNNKKRHNNNDNSGFCYATKDNESLKQQQQQQSFIPLSEVGYMDDGKQNLKHKFRGVRQRPWGRWAAEIRDPSRGRRVWLGTFDTAEEAAMVYDKAAISFRGAAAVTNFIKPPLKDDGTSSACASPTSVLVFQPWVEPPCLEETFKEEEVFNGLTDGYDDDFLFSNDALCDQPLPTTFSNIDCVDITLDEDLESCKWDVDNYFADDPSLQQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02107 268 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Pumo7g02107 268 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Pumo7g02107 268 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Pumo7g02107 268 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Pumo7g02107 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 177 - -
Pumo7g02107 268 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Pumo7g02107 268 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Pumo7g02107 268 CDD AP2 110 166 IPR001471 GO:0003700|GO:0006355
Pumo7g02107 268 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Pumo7g02107 268 FunFam Ethylene-responsive transcription factor 2 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02107 Pumo-Chr7 58012179 58013162 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02107 4 193 AP2-EREBP Transcription Factor Family AT4G27950 40.359 2.38e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g02107 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02107 - - gmx:100815537 380.563