Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02100 ATGGAATCTGTGTTTGTTCCAGAAGTTATTCGCATTTCAGCTACTGATCCTGATGCCACAGACTCGTCCAACGACGATGACGATGACATGCTTCTTCACCTCCCCAGGTTCAAGAAAGTGGTCAACGAAATCAAACTTGTGTGCCAAGAAAACAAAAACAATGGCACTACTGAAAACCCTTTGCAGAAAAAGCGAGTGTGGCTTGGCACCTACGGCACTGCTGAAGAGGCTGCAATGGCTCACGACAGAGCCGCTATTAGTTTCAAAGGAGGCGCTGATGCTGTTACAACTTTCATCAAACCACCATTGAAAGATTGTAATCTTGTGATTAATGGAACAAGTAGCGCATGTCCTTCACCCACCTTTGATTCTGTGTTTCAGCCATGGAGGGAATCACCCGTGTCTTTGGAAGAAACCTTCAAAGAAGAAGAACAAGTGTTGTTTAATGGGTAA 453 0.4459 MESVFVPEVIRISATDPDATDSSNDDDDDMLLHLPRFKKVVNEIKLVCQENKNNGTTENPLQKKRVWLGTYGTAEEAAMAHDRAAISFKGGADAVTTFIKPPLKDCNLVINGTSSACPSPTFDSVFQPWRESPVSLEETFKEEEQVLFNG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02100 150 CDD AP2 59 98 IPR001471 GO:0003700|GO:0006355
Pumo7g02100 150 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 113 - -
Pumo7g02100 150 Pfam AP2 domain 47 90 IPR001471 GO:0003700|GO:0006355
Pumo7g02100 150 Gene3D AP2/ERF domain 36 100 IPR036955 GO:0003700|GO:0006355
Pumo7g02100 150 SUPERFAMILY DNA-binding domain 56 91 IPR016177 GO:0003677
Pumo7g02100 150 ProSiteProfiles AP2/ERF domain profile. 36 99 IPR001471 GO:0003700|GO:0006355
Pumo7g02100 150 SMART rav1_2 36 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02100 Pumo-Chr7 57811340 57811864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02100 7 102 AP2-EREBP Transcription Factor Family AT2G46310 34.559 2.15e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo7g02100 AP2 3.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02100 - - gmx:100815537 116.316