Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02040 ATGGTCGAGACCATAGCTCAGAGGCAATGGATTTTTGGAGCCAGGCAATTAGGCCTTCGCCTTAGAGCTGCGTTGATATCGCATATATATCAGAAGGGCTTACATCTTTCAAGTAGATCGCGCCAAAGTCACACCGGCGGTGAGATAATGAACTACATGAGTGTAGATGTGCAGAGAATCACAGATTTTGTTTGGTATGTGAATGTGATATGGATGCTGCCTATACAAATTTCTTTAGCAGTGTTCATTTTGCATACAAATCTAGGACTAGGTTCATTGGCTGCATTAGCTGCTACATTGGCAGTGATGACTTTGAACATACCTCTAACAAAGATACAGAAAAGATACCAAACCAAGATCATGGATGCCAAGGACAACAGGATGAAAGCCACTTCAGAAATCCTCAGAAACATGAGGACCTTGAAACTTCAAGCATGGGACAGTAAATTTTCTCAAAGGATAGAAGCACTTAGGCAGGTAGAGTACAACTGGTTAACGAAGTCATTGAGGCAAGCAGCATTTACTGCTTTCATCTTTTGGGGGTCACCTACATTCATTTCTGTGATAACTTTTTGGGCATGCATGTTCATGGGGATTGAACTCACAGCAGGAAGGGTCTTGTCTGCATTTGCCACGTTCCGAATGTTGCAGGATCCTATATTTAGCTTACCTGATTTGCTCAATGTCATTGCTCAAGGAAAAGTTTCAGTTGATAGGATCGCTTCCTTCCTTCGCAAGGAAGAAATCCAGCATGATGTCATTGAAAATGTTGCAAAGGACAAAACAGAATTTGACATAGTTATTGAGAAAGGGAGGTTCAGCTGGGATCCTGAGTCAAAAACTCCATCCATTGATGAAATAGAGTTGAAAGTTAAGAGGGGAATGAAGGTGGCAGTTTGTGGATCTGTAGGTTCAGGGAAGTCTAGTCTGCTATCAGGCATTTTGGGAGAAATATATAAACAATCTGGGACAGTAAAGATTAGTGGAACAAAGGCTTATGTTCCACAATCAGCATGGATACTGACTGGAAACATAAGGGACAACATTACCTTTGGAAAAGAGTACAGTGGTGATAAGTATGAGAAGACTGTTGAGGCTTGTGCATTGAAAAAGGACTTTGAGCTATTCTCATGTGGTGACATGACAGAGATTGGAGAGAGAGGGATTAACATGAGTGGGGGACAGAAGCAAAGGATTCAGATTGCTAGAGCAGTTTACCAGGATGCTGACATATACCTTTTTGATGACCCTTTCAGTGCAGTTGATGCTCACACTGGCACTCACCTCTTTAAGGAGTGCCTTATGGGGATTCTTAAAGAGAAAACTATAATTTTTGTTACACACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAGCACAAGCTGGAAAATTTGAAGATCTTCTAAAGCAAAATATAGGATTTGAAGTTTTAGTTGGTGCTCACAGCAAAGCTCTAGAGTCAATTGTTGTGGCTGAAAATTCAAGTAGAACAAATTTAATTTCAATAGCTGAGGAAGGGGAATCCAAGTCAAGTCTCCAACATGTGCACACACAGCATGACACAGTGCAAGACAATCCTCCAGAGGGCAAAGGAAATGATGGAAAGTTGGTGCAAGAAGAGGAAAGAGAAACAGGAAGCATAGCAAAAGAAGTTTACTGGGAATATTTGACCACTGTCAAAGGGGGAATCCTGGTTCCTCTCATTCTCTTGGCACAGTCTTCATTCCAAATACTTCAGATTGCCAGTAACTATTGGATGGCTTGGGTTTGTCCCACAAGTAGTGATGCTAAGCCTATATTTGACATGAACTTCATACTACTTATTTATATGGCACTCTCAGTTGCTGGTTCATTGTGTGTTTTGCTGCGAGCCATGATGGTGTTAAATGCTGGACTTTGGACAGCACAGACACTTTTCACAAAGATGTTGCATAGCGTGCTCCGCGCCCCCATGGCATTTTTTGATTCTACACCAACTGGAAGAATCTTGAACAGGGCCTCCACAGATCAAAGTGTGCTAGACTTGGAAATGGCAAACAAAATAGGATGGTGTGCTTTCTCAATAATACAGATTCTAGGCACTATTGCAGTGATGTGTCAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAATTGCAGTCTGCATATGGTATCAAAGATACTATACACCAACAGCAAGAGAACTGGCTCGCTTAGCACAGATTCAAATCACTCCAATTCTCCATCATTTTTCAGAATCTTTAGCAGGAGCAGCATCAATACGAGCTTTCGATCAAGAGGGCCGTTTCATATACACAAATCTTCTTCTTGTGGATGGCTTCTCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTTTCAAATTTTGTTTTTGCCTTCTCACTGGTCATGCTAGTGAGCCTCCCTGAAGGAATAATCAATCCAAGTATTGCCGGGTTGGCAGTTACATATGGGATCAATCTGAATGTGTTGCAAGCTTCAGTTATATGGAACATATGCAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAGTATACAAATATAGCAAGTGAAGCACCTCTTGTGATTGAAGACAGCAGGCCACCAAGCAATTGGCCAGAAACTGGAACAATATGTTTCAAAAATTTGCAGATACGTTATGCTGAACATCTACCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGAAGGAAGAAAGTTGGCGTTGTAGGGCGTACCGGGAGTGGAAAATCAACTCTCATACAGGCCATTTTCAGGATTGTTGAACCAAGAGAAGGAAGCATCATAATTGACAATGTGGACATATGCAAGATAGGTCTCTATGACTTAAGGTCAAGGCTTAGCATCATCCCACAAGACCCTGCATTGTTTGAAGGCACTGTTAGAGGAAACCTGGACCCATTGCAGCAATACTCTGACATTGAAGTGTGGGAGGCTCTAGATAAATGTCAGCTAGGTCACCTAGTAAGGGCCAAGGAAGAGAAGTTGGATTCCCCAGTGGTTGAAAATGGTGATAACTGGAGTGTGGGCCAAAGGCAATTATTTTGCCTTGGAAGAGCCCTGCTGAAAAGAAGCAGCATATTAGTACTAGATGAAGCAACAGCCTCAGTGGATTCTGCAACTGATGGGGTGATACAGAACATCATAAGCCAAGAGTTCAACGATAGAACTGTTGTCACAATAGCTCATAGAATCCACACAGTTATCGATAGCGATTTGGTTTTGGTGCTCAGCGATGGAAGAATTGCTGAGTATGATGAACCATCAAAGTTACTTGAGAGAGAAGATTCCTTCTTCTTTAAACTTATAAAGGAGTATTCTGGAAGATCACATAACTTCAGCAGCATGGCAACTCAACATGTCCAAAGCAGGGAGCAATTATAG 3453 0.4164 MVETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSSRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQTKIMDAKDNRMKATSEILRNMRTLKLQAWDSKFSQRIEALRQVEYNWLTKSLRQAAFTAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLRKEEIQHDVIENVAKDKTEFDIVIEKGRFSWDPESKTPSIDEIELKVKRGMKVAVCGSVGSGKSSLLSGILGEIYKQSGTVKISGTKAYVPQSAWILTGNIRDNITFGKEYSGDKYEKTVEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFEDLLKQNIGFEVLVGAHSKALESIVVAENSSRTNLISIAEEGESKSSLQHVHTQHDTVQDNPPEGKGNDGKLVQEEERETGSIAKEVYWEYLTTVKGGILVPLILLAQSSFQILQIASNYWMAWVCPTSSDAKPIFDMNFILLIYMALSVAGSLCVLLRAMMVLNAGLWTAQTLFTKMLHSVLRAPMAFFDSTPTGRILNRASTDQSVLDLEMANKIGWCAFSIIQILGTIAVMCQVAWQVFVIFIPVIAVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLLLVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIASEAPLVIEDSRPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDICKIGLYDLRSRLSIIPQDPALFEGTVRGNLDPLQQYSDIEVWEALDKCQLGHLVRAKEEKLDSPVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQNIISQEFNDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSKLLEREDSFFFKLIKEYSGRSHNFSSMATQHVQSREQL 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02040 1150 SMART AAA_5 919 1111 IPR003593 GO:0016887
Pumo7g02040 1150 SMART AAA_5 293 466 IPR003593 GO:0016887
Pumo7g02040 1150 FunFam ABC transporter C family member 10 1 248 - -
Pumo7g02040 1150 CDD ABC_6TM_ABCC_D1 1 240 IPR044746 GO:0140359
Pumo7g02040 1150 FunFam ABC transporter C family member 5 251 498 - -
Pumo7g02040 1150 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 1130 - -
Pumo7g02040 1150 CDD ABCC_MRP_domain1 266 466 - -
Pumo7g02040 1150 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 232 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g02040 1150 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 576 856 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g02040 1150 SUPERFAMILY ABC transporter transmembrane region 562 875 IPR036640 GO:0005524|GO:0016020
Pumo7g02040 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1121 IPR027417 -
Pumo7g02040 1150 Gene3D - 876 1128 IPR027417 -
Pumo7g02040 1150 FunFam ABC transporter C family member 3 876 1128 - -
Pumo7g02040 1150 ProSitePatterns ABC transporters family signature. 391 405 IPR017871 GO:0005524|GO:0016887
Pumo7g02040 1150 Gene3D - 261 492 IPR027417 -
Pumo7g02040 1150 Pfam ABC transporter 285 418 IPR003439 GO:0005524
Pumo7g02040 1150 MobiDBLite consensus disorder prediction 521 551 - -
Pumo7g02040 1150 CDD ABCC_MRP_domain2 891 1111 - -
Pumo7g02040 1150 Pfam ABC transporter 910 1058 IPR003439 GO:0005524
Pumo7g02040 1150 Pfam ABC transporter transmembrane region 586 820 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g02040 1150 Pfam ABC transporter transmembrane region 15 215 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g02040 1150 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 266 489 IPR003439 GO:0005524
Pumo7g02040 1150 Gene3D ABC transporter type 1, transmembrane domain 539 874 IPR036640 GO:0005524|GO:0016020
Pumo7g02040 1150 Gene3D ABC transporter type 1, transmembrane domain 4 250 IPR036640 GO:0005524|GO:0016020
Pumo7g02040 1150 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 895 1127 IPR003439 GO:0005524
Pumo7g02040 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 482 IPR027417 -
Pumo7g02040 1150 FunFam ABC transporter C family member 5 538 874 - -
Pumo7g02040 1150 CDD ABC_6TM_ABCC_D2 574 868 IPR044726 GO:0140359
Pumo7g02040 1150 SUPERFAMILY ABC transporter transmembrane region 6 248 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02040 Pumo-Chr7 55796149 55802116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02040 245 480 Calmodulin-binding Proteins AT2G36910 30.435 2.27e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02040 - - gmx:100817486 2155.95