Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02015 ATGTCCTATAATAATGATAATGTTTTTCCCACCACAAGCACCATGGGAAGTAGTAACTTATCCTATGAGGATGCAAGCTTTGATGAGAGGCATGGCAAAATGCTCAAGAGTAATAGCTCAAACTCCATCAATATTTCTCAAGATGTTGCTAATTCTTCACACATACCTCCCTCAGCACCATCCTCATCCACCTTCATTTTGTCCTTTGAAAACTCAACTGTGGAAGTACCTGCCCTTCATGATAGACCTAAGAATAAATCCCCTAAGCATTTTGGTGGGGATGCCACATGTTCTTCCCTTTTGAGCTCAGAACTAACACTCAGCAGTGACCATGTCATCACTAAACCAAAGGCCAAGCAAGGTGCCAACAAGAGGTATAGAAGCTCATCTGAGATTCAAGATCATATAATGGCTGAGAGAAAAAGGAGACGAGAACTCACTGAGAGGTTCATAGCACTTTCTGCCACCATACCCGGATTGAAGAAGACGGACAAGGCCTATATACTTCGGGAAGCTATCACTTATATGAAACAACTCCAAGAGAGAGTGAAAGAGCTAGAGAATCAGAACAAGAGGAAAACAGTAGAATCAAGAATATTCATCAAGAAATCCCAAGTGTGCTCAAGAGAAGATCAAGAACCAAATTCATGTGAAACAAACTCTTGTAGATCCACGCCACCACTACCTCAGGTTGAAGCAAGAGTGTTGGAAAAGGAAATTCTCATTGGAATCCACTGCCAGAAACAAAAGGATATTGTGCTCAAAATCATGGCCTTGCTTCAAAATCTCCATCTCTCTCTTGCTAGTAGTAGTGTGTTGCCATTTGGGACTTCCACACTAAAAGTTACAATCATTGCCCAGATGGGCGACAAATACTGTATGACAGTGAATGATCTAGTAAAAAGCCTGAGGCAAGATCTCTTGAAGTCACATGACATTCAAGAGTCATATTCCTAA 957 0.4127 MSYNNDNVFPTTSTMGSSNLSYEDASFDERHGKMLKSNSSNSINISQDVANSSHIPPSAPSSSTFILSFENSTVEVPALHDRPKNKSPKHFGGDATCSSLLSSELTLSSDHVITKPKAKQGANKRYRSSSEIQDHIMAERKRRRELTERFIALSATIPGLKKTDKAYILREAITYMKQLQERVKELENQNKRKTVESRIFIKKSQVCSREDQEPNSCETNSCRSTPPLPQVEARVLEKEILIGIHCQKQKDIVLKIMALLQNLHLSLASSSVLPFGTSTLKVTIIAQMGDKYCMTVNDLVKSLRQDLLKSHDIQESYS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02015 318 Coils Coil 169 196 - -
Pumo7g02015 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Pumo7g02015 318 PANTHER BHLH TRANSCRIPTION FACTOR 2 310 - -
Pumo7g02015 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 197 IPR036638 GO:0046983
Pumo7g02015 318 SMART finulus 136 185 IPR011598 GO:0046983
Pumo7g02015 318 Gene3D - 121 194 IPR036638 GO:0046983
Pumo7g02015 318 Pfam Helix-loop-helix DNA-binding domain 134 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02015 Pumo-Chr7 54671103 54677713 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02015 49 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.377 3.23e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g02015 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02015 - - gmx:100808919 467.233